Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_001720.1 Length=43804 Score E Sequences producing significant alignments: (Bits) Value seq560 98.7 3e-16 seq128 98.7 3e-16 >seq560 Length=1805984 Score = 98.7 bits (108), Expect = 3e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 1002 TTCCGCCCGGCTGTTACGGTCGGATTGCTCCTCGCTCGGGCTTGGCCGCCAAATTTTTCA 1061 |||| | ||| |||||||| || | || || |||||||||||||| | ||| || | Sbjct 360196 TTCCCCACGGTTGTTACGGCCGCGTGGCCCCGCGCTCGGGCTTGGCTGTCAAGAAGTTTA 360137 Query 1062 TTGACGTCGGAGCGGGTGTTATCGATCCCGATTACCGCGGGAACGTTAGCGTGGTTTTGT 1121 | || || || || |||||| ||||| | ||||| ||||| | | | || ||||||| Sbjct 360136 TCGATGTGGGCGCTGGTGTTGTCGATGCGGATTATCGCGGTGAGTTGGGTGTTGTTTTGT 360077 Query 1122 TCAATTTCTCCGA-GAGCTCGTTCAACATCAGGCGAGGCGATAGGGTAGCACAGCTTATT 1180 | |||||| ||| |||| | ||| || | | || ||| | || ||||||||| | Sbjct 360076 TTAATTTCGGCGATGAGCCCTTTC-ACGTGAATGTCGGAGATCGTGTTGCACAGCTTGTG 360018 Query 1181 CTGGAGCGTATTA 1193 |||||||||||| Sbjct 360017 TTGGAGCGTATTA 360005 >seq128 Length=801389 Score = 98.7 bits (108), Expect = 3e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 1002 TTCCGCCCGGCTGTTACGGTCGGATTGCTCCTCGCTCGGGCTTGGCCGCCAAATTTTTCA 1061 |||| || || |||||||| || | || || |||||||||||||| | |||| || | Sbjct 472138 TTCCCCCAGGTTGTTACGGCCGCGTGGCCCCGCGCTCGGGCTTGGCTGTCAAAAAGTTTA 472197 Query 1062 TTGACGTCGGAGCGGGTGTTATCGATCCCGATTACCGCGGGAACGTTAGCGTGGTTTTGT 1121 | || || || || |||||| ||||| | ||||| ||||| | | | || ||||||| Sbjct 472198 TCGATGTGGGTGCTGGTGTTGTCGATGCGGATTATCGCGGTGAGTTGGGTGTTGTTTTGT 472257 Query 1122 TCAATTTCTCCGA-GAGCTCGTTCAACATCAGGCGAGGCGATAGGGTAGCACAGCTTATT 1180 | |||||| ||| |||| | || || | | || ||| | || ||||||||| | Sbjct 472258 TTAATTTCGGCGATGAGC-CTTTTCACGTGAATGTCGGAGATCGTGTTGCACAGCTTGTG 472316 Query 1181 CTGGAGCGTATTA 1193 |||||||||||| Sbjct 472317 TTGGAGCGTATTA 472329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140049332329716