Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq475 113 4e-20 seq557 100 2e-16 seq492 93.3 4e-14 >seq475 Length=1546706 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| ||| | || ||||||||||| |||||||| |||| | Sbjct 934394 CCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTTTGGATGTTATAATCCGAC 934453 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | |||| || ||||||||| || || || ||| |||| || | ||| |||||| || Sbjct 934454 AAGGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGA 934513 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||||| || || | | || | || | || Sbjct 934514 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACATTTGCAACGTTGTCCGACGATTCTACC 934573 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| ||||||| || ||||| || || ||||| Sbjct 934574 TCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCAT 934620 >seq557 Length=252103 Score = 100 bits (110), Expect = 2e-16 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||||||||||| |||||||| ||||| | Sbjct 155194 CCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 155135 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | ||||||| ||||| ||||| || | || || | |||||| || |||| Sbjct 155134 AAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATC--CGGGG 155077 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||| ||||| | | | ||| || || |||| Sbjct 155076 ATGCCTTCCTTGTCCTGAATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGACTCCACC 155017 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| ||||| ||||| || ||||| || || || ||||| Sbjct 155016 TCAAGGGTAATAGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 154970 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| |||| || | ||||||||||| |||||||| ||||| | Sbjct 154968 CCACCTCGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 154909 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | ||||||| ||||| ||||| || | ||||| | ||||||||| ||| Sbjct 154908 AAGGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTC--GGGGG 154851 Query 21069 ACGCCTTCCTTGTC 21082 | |||||||||||| Sbjct 154850 ATGCCTTCCTTGTC 154837 >seq492 Length=1085467 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| |||| || | ||||||||||| |||||||| ||||| | Sbjct 148282 CCACCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 148341 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | ||||||| ||||| ||||| || | ||||| | |||||||||| ||| Sbjct 148342 AACGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGG 148401 Query 21069 ACGCCTTCCTTGTC 21082 | |||||||||||| Sbjct 148402 ATGCCTTCCTTGTC 148415 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||| |||| || | ||||||||||| |||||||| ||||| | Sbjct 148510 CCACCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 148569 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | ||||||| ||||| ||||| || | ||||| | |||||||||| ||| Sbjct 148570 AACGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGG 148629 Query 21069 ACGCCTTCCTTGTC 21082 | |||||||||||| Sbjct 148630 ATGCCTTCCTTGTC 148643 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||||||||||| |||||||| ||||| | Sbjct 148054 CCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 148113 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | ||||||| ||||| ||||| || | ||||| | |||||||||| ||| Sbjct 148114 AACGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGG 148173 Query 21069 ACGCCTTCCTTGTC 21082 | |||||||||||| Sbjct 148174 ATGCCTTCCTTGTC 148187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422253420723068