Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq492 147 2e-30 seq557 138 1e-27 seq28 111 2e-19 >seq492 Length=1085467 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || |||||||||||||| ||||| |||| ||||| || | Sbjct 148280 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTCG 148221 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| ||||| | ||||| || ||||||||| ||||||| Sbjct 148220 GACACGATTGAGAACG-TCAAGACCAAAATCCAGGACAAGGAAGGCATCCCCCCGGACCA 148162 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| | | |||||||| Sbjct 148161 GCAGCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGACGGACGCACGTTGAGTGACTACAA 148102 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| |||| || || || || Sbjct 148101 CATTCAGAAGGAGTCCACCCTTCACCTGGT 148072 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || |||||||||||||| ||||| |||| ||||| || | Sbjct 148508 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTCG 148449 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| ||||| | ||||| || ||||||||| ||||||| Sbjct 148448 GACACGATTGAGAACG-TCAAGACCAAAATCCAGGACAAGGAAGGCATCCCCCCGGACCA 148390 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| | | |||||||| Sbjct 148389 GCAGCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGACGGACGCACGTTGAGTGACTACAA 148330 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| |||| || || || || Sbjct 148329 CATTCAGAAGGAGTCCACCCTTCACCTGGT 148300 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || |||||||||||||| ||||| |||| ||||| || | Sbjct 148736 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTCG 148677 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| ||||| | ||||| || ||||||||| ||||||| Sbjct 148676 GACACGATTGAGAACG-TCAAGACCAAAATCCAGGACAAGGAAGGCATCCCCCCGGACCA 148618 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| | | |||||||| Sbjct 148617 GCAGCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGACGGACGCACGTTGAGTGACTACAA 148558 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| |||| || || || || Sbjct 148557 CATTCAGAAGGAGTCCACCCTTCACCTGGT 148528 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| || || | |||||||| || ||||||| ||| || || ||||| || Sbjct 147731 GACAAGGAGGGAATTCCTCCCGACCAGCAGCGTCTCATCTTCGCTGGGAAGCAGCTTGAG 147672 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| || ||| | | ||||||||||||||||| ||| | || ||||||| ||| || Sbjct 147671 GACGGACGTACCTTGAGTGACTACAACATCCAGAAAGAGTCTACATTGCATCTGGTGCTG 147612 Query 40903 CGCTTGAGGGGCGG 40916 ||| | |||| || Sbjct 147611 CGCCTTCGGGGTGG 147598 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 ||||||| ||||| ||||| || || | |||||||| || || || | ||| ||||| Sbjct 147284 AAAATTCAGGACAAGGAGGGAATTCCTCCCGACCAGCAGCGTCTGATTTTCGCTGGCAAG 147225 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | || ||| | | |||||||||||||||||| ||| | || ||||| Sbjct 147224 CAGCTTGAGGATGGTCGTACCTTGAGCGACTACAACATCCAGAAAGAGTCTACACTGCAC 147165 Query 40894 CTAGTGTTGCGCTTGAGGGGCGG 40916 | ||| | ||| | ||||||| Sbjct 147164 TTGGTGCTTCGCCTCCGGGGCGG 147142 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| ||||| || || || || | || || || | | Sbjct 147140 ATGCAGATTTTTGTGAAGACGCTTACGGGTAAGACGATTACGCTTGAGGTGGAGTCGTCG 147081 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | ||| || || | ||||| ||||| || || | |||||| Sbjct 147080 GACACCATTGAAAATGTGAAGACCAAGATCCAGGACAAGGAGGGTATTCCGCCCGACCAG 147021 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| ||||| || || | || ||| | | ||| |||||| Sbjct 147020 CAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACCTTGAGCGATTACAAC 146961 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || || || || ||| | || || | ||||| Sbjct 146960 ATCCAGAAGGAGTCTACTCTTCACCTTGTGCTCCGTCTGCGCGGCGG 146914 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||| || || | |||||||| || || || | ||| ||||| Sbjct 147512 AAGATTCAGGACAAGGAGGGAATTCCTCCCGACCAGCAGCGTCTGATTTTCGCTGGCAAG 147453 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | || ||| | | ||||||||||| ||||| ||| | || ||||| Sbjct 147452 CAGCTTGAGGATGGTCGTACCTTGAGTGACTACAACATTCAGAAAGAGTCTACATTGCAT 147393 Query 40894 CTAGTGTTGCGCTTGAGGGGCGG 40916 || ||| ||||| | ||||||| Sbjct 147392 CTGGTGCTGCGCCTCCGGGGCGG 147370 >seq557 Length=252103 Score = 138 bits (152), Expect = 1e-27 Identities = 155/204 (76%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || |||||||||||||| ||||| |||| ||||| || | Sbjct 154744 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTCA 154803 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| ||||| | ||||| || ||||||||| ||||| Sbjct 154804 GACACGATTGAGAACG-TCAAGACCAAAATCCAGGACAAGGAAGGCATCCCCC--GACCA 154860 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| |||||| | | |||||||| Sbjct 154861 GCAGCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGACGGACGCACCTTGAGTGACTACAA 154920 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| |||| || || Sbjct 154921 CATTCAGAAGGAGTCCACCCTTCA 154944 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | || || || || || ||| | || || || || | Sbjct 154970 ATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACTATTACCCTTGAGGTGGAGTCCTCG 155029 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| || |||| ||||| || |||||||||| || ||| Sbjct 155030 GACACTATTGAGAATGTGAAGACGAAGATTCAGGACAAGGAAGGCATCCCCG--GATCAG 155087 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| || || | | ||||||||| Sbjct 155088 CAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGAGTGACTACAAC 155147 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| |||| || || || || Sbjct 155148 ATTCAGAAGGAGTCCACCCTTCACCTGGT 155176 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||| |||| | |||| ||||| || ||||||| ||| || || Sbjct 155279 AAGATTCAGGACAAGGAGGGTATCCTC-CGGATCAGCAGCGTCTCATCTTCGCTGGGAAG 155337 Query 40834 CAGCTGGACGACGAGC-GCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| | | ||| | | |||||||||||| ||||||||| |||| || || Sbjct 155338 CAGCTTGAGGACGGTCCGTACCTTGAGCGACTACAACATTCAGAAGGAGTCCACCCTTCA 155397 Query 40893 TCTAGT 40898 || || Sbjct 155398 CCTGGT 155403 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || || || || || || | || || || | | Sbjct 156334 ATGCAGATTTTCGTTAAGACGTTGACTGG-AAGACTATTACGCTTGAAGTTGAGTCATCG 156392 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||| | | ||| || || | ||||| ||||| || || | ||||| Sbjct 156393 GACACGATTGAAAATG-TGAAGACCAAGATCCAGGACAAGGAGGGTATTCCGCCCGACCA 156451 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| ||||| ||||| || || | || || | | ||| ||||| Sbjct 156452 GCAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACTTTGAGCGATTACAA 156511 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || || ||||| ||| | || || | ||||| Sbjct 156512 CATCCAGAAGGAGTCTACTCTTCATCTTGTGCTCCGTCTGCGCGGCGG 156559 >seq28 Length=612614 Score = 111 bits (122), Expect = 2e-19 Identities = 385/589 (65%), Gaps = 19/589 (3%) Strand=Plus/Minus Query 116615 TTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGG 116674 |||||||| | | | || | ||| ||| ||||||| || ||||| |||||||| Sbjct 279775 TTCCCCATCCGACATCCTGCCATCTGGGAACTGTACAAGAAACATCAGGCGGCGTTCTGG 279716 Query 116675 ACCGTCGAGGAGGTGGACCTGTCCAAGGACAC--GAGCGACTGGGAG-CGCTTGAACGAC 116731 || | |||||| | || || || |||| | || |||||||| |||| | || Sbjct 279715 ACGGCCGAGGAAATCGATCTTTC--AGGAGATCTGAAGGACTGGGAATCGCT-GTCGGAT 279659 Query 116732 AACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTC 116791 ||| | ||||||||||| ||| ||||||| || || || || || || || Sbjct 279658 GGGGAGAGGCATTTCATCAAAACGGTGTTGGCCTTCTTTGCGGCGTCGGATGGAATTGTA 279599 Query 116792 AACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTC 116851 || || |||| ||| | || | | || || ||| || | ||||| | || ||| Sbjct 279598 CTGGAAAACTTGGTAGAGAGATTTTGTAACGACGTACAGTTGCCGGAGGCCAGATGTTTC 279539 Query 116852 TACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGAC 116911 || | || ||| || |||||||| ||||||||||||| ||||||| || | || Sbjct 279538 TATGCGTTCCAGGCGGCGATGGAGAATGTGCACTCGGAAACGTATTCGCTGCTGTTGGAT 279479 Query 116912 ACGTA---CGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATG 116968 ||||| | | | | | ||| || | || | || || | || |||||| ||| Sbjct 279478 ACGTATATCAAGGACAATACTGAGAAG--GATCGGCTT-TTCAGAGCGATCGAGGAGATT 279422 Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGA-TCGCCGGCAGAGAGGCCGC 117027 || ||||| | || || || |||||| | || |||| | | |||||| | Sbjct 279421 CCTTGCGTGACTCGCAAAGCGGAATGGGCGATTCGATGGATTGGATCGCAGAGTAG---- 279366 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTC-GGGCAGTT 117086 ||| | ||||| ||||||| || || || || ||||| | ||||| || ||| ||| Sbjct 279365 CTTTGCGGAGCGATTGGTGGCGTTTGCAGCTGTGGAGGGGATTTTCTTCTCAGGGTCGTT 279306 Query 117087 TCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACG 117146 | | || || || | | ||||||||||| | ||| | || | || || |||| Sbjct 279305 TTG-TGCGATTTTCTACTTGAAGAAACGCGGGTTGATGTCTGGATTAACGTTTTCGAACG 279247 Query 117147 AGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195 | | ||||| | || ||||| ||||||| || ||| |||||||| Sbjct 279246 AATTGATCTCACGTGATGAGGGATTGCATTGTGAACATGCTTGTTTGCT 279198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515211967610480