Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq492 89.7 8e-13 >seq492 Length=1085467 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | ||||| || || || || | || |||| | Sbjct 148052 ATGCAGATTTTTGTGAAGACTTTGACAGGAAAGACGATTACGCTTGAAGTTGAGTCCTCG 147993 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| |||| || ||| ||||| || || || ||||| || || ||||| Sbjct 147992 GACACAATCGAGAATGTTAAGAC-GAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCA 147934 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || ||||| || || || || | ||||| | || || || || || || Sbjct 147933 GCAGCGTCTGATTTTCGCTGGGAAGCAGCTTGAGGACGGACGTACTTTGAGTGACTACAA 147874 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| || || |||||| |||| || ||| | ||||||||||| Sbjct 147873 CATTCAGAAAGAGTCTACATTGCATCTGGTGTTGCGTCTTCGAGGTGGTAT 147823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755445395286400