Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq557 113 3e-20 seq492 113 3e-20 >seq557 Length=252103 Score = 113 bits (124), Expect = 3e-20 Identities = 147/198 (74%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || ||||| ||||||||||| || | || || |||| || | ||||||||||||||| Sbjct 154932 TCCTTCTGAATGTTGTAGTCACTCAAGGTG-CGTCCGTCCTCAAGCTGCTTGCCTGCGAA 154874 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || |||||||||||| ||| | || |||||||| || ||||| | | || Sbjct 154873 GATAAGACGCTGCTGGTCG--GGGGATGCCTTCCTTGTC--CTGGATTTTGGTCTTGACG 154818 Query 34318 GGCT--ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTC 34375 || |||| || | || ||||| || | ||||| |||||||| ||||| || ||| Sbjct 154817 TTCTCAATCGTGTCTGAGGACTCGACCTCGAGTGTGATTGTTTTGCCCGTGAGGGTCTTC 154758 Query 34376 ACAAAGATCTGCATCGCT 34393 |||||||||||||| ||| Sbjct 154757 ACAAAGATCTGCATGGCT 154740 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| ||||||||||| || ||| |||| Sbjct 155862 AGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCC 155803 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| |||||||| || |||||||| ||| || | | ||||||||| Sbjct 155802 TCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCC 155743 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | |||| ||| | || || || || | ||| || || Sbjct 155742 TGGATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACTTCAAGCGTAATAGTC 155683 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | || |||||||| |||||||| Sbjct 155682 TTTCCAGTCAACGTCTTCACAAAAATCTGCAT 155651 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || || || || ||| |||||||| || |||||||| | Sbjct 156105 CCACCGCGGAGGCGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTC 156046 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || || | ||||||||| |||||||| | |||||||||||| || Sbjct 156045 AAGGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGA 155986 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | || | |||| || | |||||| || Sbjct 155985 ATACCCTCCTTATCCTGGATCTTGGTCTTCACATTTTCAATCGTGTCCGACGATTCCACC 155926 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| || || || || || || || |||||||| |||||||| Sbjct 155925 TCAAGCGTAATCGTCTTACCCGTAAGCGTCTTCACAAAAATCTGCAT 155879 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||| || || | |||| || ||||| |||||||| ||| | Sbjct 156559 CCGCCGCGCAGACGGAGCACAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 156500 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || || | ||||||||| |||||||| || |||||||||||| || Sbjct 156499 AAAGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGGA 156440 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | |||| || | || || || Sbjct 156439 ATACCCTCCTTGTCCTGGATCTTGGTCTTCACATTTTCAATCGTGTCCGATGACTCAACT 156380 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| || || || || || | || || || || |||||||| Sbjct 156379 TCAAGCGTAATAGTCTT-CCAGTCAACGTCTTAACGAAAATCTGCAT 156334 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| ||||||||||| || ||| |||| Sbjct 155634 AGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCC 155575 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| |||||||| || |||||||| ||| || | | ||||||||| Sbjct 155574 TCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCC 155515 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | |||| ||| | || || || || | || || || Sbjct 155514 TGGATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACTTCAAGAGTAATAGTC 155455 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | || ||||| || |||||||| Sbjct 155454 TTTCCAGTCAATGTCTTCACGAAAATCTGCAT 155423 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| || ||| |||| Sbjct 155179 AGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCC 155120 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| || || |||||||| || |||| | || |||||||| Sbjct 155119 TCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATC--CGGGGATGCCTTCCTTGTCC 155062 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | || || || || | || || || Sbjct 155061 TGAATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGACTCCACCTCAAGGGTAATAGTC 155002 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| | ||||||||| || |||||||| Sbjct 155001 TTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 154970 >seq492 Length=1085467 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||| ||||| | |||| || ||||| |||||||| ||| | Sbjct 146914 CCGCCGCGCAGACGGAGCACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 146973 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || || | ||||||||| |||||||| || |||||||||||| || Sbjct 146974 AAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGGA 147033 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | || | || | ||| || || Sbjct 147034 ATACCCTCCTTGTCCTGGATCTTGGTCTTCACATTTTCAATGGTGTCCGACGACTCCACC 147093 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| || || || || || || || |||||||| |||||||| Sbjct 147094 TCAAGCGTAATCGTCTTACCCGTAAGCGTCTTCACAAAAATCTGCAT 147140 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||||| ||| | ||| |||||||| |||||||||||| | Sbjct 147142 CCGCCCCGGAGGCGAAGCACCAAGTGCAGTGTAGACTCTTTCTGGATGTTGTAGTCGCTC 147201 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || || | ||||||||| |||||||| || |||||||||||| || Sbjct 147202 AAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGA 147261 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| || || ||| | || |||||| ||| | || || || Sbjct 147262 ATTCCCTCCTTGTCCTGAATTTTCGTCTTCACATTCTCTATCGTATCCGATGACTCAACT 147321 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| || ||||| || || | || |||||||| |||||||| Sbjct 147322 TCAAGCGTAATCGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147368 Score = 113 bits (124), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| || | || |||| Sbjct 148525 AGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCC 148584 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||||||||| || || ||||||||||| ||| | || |||||||| Sbjct 148585 TCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTC- 148643 Query 34298 GCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||| ||| | | | |||| || | || ||||| || | ||||| | Sbjct 148644 -CTGGATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTG 148702 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 ||||||| ||||| || ||||||||||||||||| ||| Sbjct 148703 TTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGGCT 148740 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| || | || |||| Sbjct 148069 AGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCC 148128 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||||||||| || || ||||||||||| ||| | || |||||||| Sbjct 148129 TCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTC- 148187 Query 34298 GCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||| ||| | | | |||| || | || ||||| || | ||||| | Sbjct 148188 -CTGGATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTG 148246 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||| ||||| || ||||||||||||||||| Sbjct 148247 TTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 148280 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || || ||||| ||||||||||| || | || |||| Sbjct 148297 AGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCC 148356 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||||||||| || || ||||||||||| ||| | || |||||||| Sbjct 148357 TCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTC- 148415 Query 34298 GCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||| ||| | | | |||| || | || ||||| || | ||||| | Sbjct 148416 -CTGGATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTG 148474 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||| ||||| || ||||||||||||||||| Sbjct 148475 TTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 148508 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||||||| || || ||| |||||||| ||||||||||| | Sbjct 147370 CCGCCCCGGAGGCGCAGCACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTC 147429 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || || | ||||||||| |||||||| || |||||||||||| || Sbjct 147430 AAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGA 147489 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | || | ||| | || || || Sbjct 147490 ATTCCCTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACT 147549 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| || ||||| || || | || |||||||| |||||||| Sbjct 147550 TCAAGCGTTATAGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147596 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||||||||| || || ||| |||||||| ||||||||||| | Sbjct 147598 CCACCCCGAAGGCGCAGCACCAGATGCAATGTAGACTCTTTCTGGATGTTGTAGTCACTC 147657 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| |||| || | |||||| || ||||| ||||| |||||||||||| || Sbjct 147658 AAGGTACGTCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGA 147717 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | || | ||| | || || || Sbjct 147718 ATTCCCTCCTTGTCCTGGATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACT 147777 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| || ||||| || || | || |||||||| |||||||| Sbjct 147778 TCAAGCGTAATCGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147824 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || |||||| || || ||| |||||||| ||||||||||| | Sbjct 147826 CCACCTCGAAGACGCAACACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTC 147885 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| |||| || | |||||| || |||||||| || |||||||| ||| || Sbjct 147886 AAAGTACGTCCGTCCTCAAGCTGCTTCCCAGCGAAAATCAGACGCTGCTGATCGGGAGGA 147945 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | || | || | || || || Sbjct 147946 ATACCCTCCTTGTCCTGAATCTTCGTCTTAACATTCTCGATTGTGTCCGAGGACTCAACT 148005 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| || || || || || | ||| |||||||| |||||||| Sbjct 148006 TCAAGCGTAATCGTCTTTCCTGTCAAAGTCTTCACAAAAATCTGCAT 148052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323067578254880