Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq557 118 8e-22 seq492 114 1e-20 seq475 105 5e-18 seq99 104 2e-17 >seq557 Length=252103 Score = 118 bits (130), Expect = 8e-22 Identities = 155/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA-GTTGGCGATCGTCGTC 45186 |||| ||| || ||| |||||||||||||||||||||| ||| | | || |||| || Sbjct 155403 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGCTCAAGGTACGGACCGTCCTC 155344 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || || ||||| || | ||||| || || ||||| | ||||||||||||| Sbjct 155343 AAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGATCCGGAGG-ATACCCTCCTTGTCCTG 155285 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || |||||| | | | |||| | || ||||| | |||||||||||| Sbjct 155284 AATCTTCGTCTTAACATTCTCGATAGTGTCGAGGAC-TCAACCTCAAGGGTAATCGTCTT 155226 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| ||||||||| || || |||||| Sbjct 155225 TCCGGTCAAAGTCTTCACGAAAATCTGCATG 155195 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||| ||||||||||||||||| ||| ||| |||| || Sbjct 155859 ACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCA 155800 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| || |||||||| | ||||||||||||| Sbjct 155799 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGG 155740 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||| ||| || || | ||||| ||||| Sbjct 155739 ATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACTTCAAGCGTAATAGTCTTT 155680 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| ||||||||||| || |||||| Sbjct 155679 CCAGTCAACGTCTTCACAAAAATCTGCATG 155650 Score = 105 bits (116), Expect = 5e-18 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||||||||||||||| ||| ||| |||| || Sbjct 154950 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAGGTGCGTCCGTCCTCA 154891 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| ||||||| || | || ||||||||| Sbjct 154890 AGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCGG--GGGATGCCTTCCTTGTCCTGG 154833 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| ||| ||||| | || || || ||| Sbjct 154832 ATTTTGGTCTTGACGTTCTCAATCGTGTCTGAGGACTCGACCTCGAGTGTGATTGTTTTG 154773 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || |||||||||||||| |||||| Sbjct 154772 CCCGTGAGGGTCTTCACAAAGATCTGCATG 154743 Score = 105 bits (116), Expect = 5e-18 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||||||||||||||| ||| ||| |||| || Sbjct 155176 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCA 155117 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| || || | || | || ||||||||| | Sbjct 155116 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCG--GGGATGCCTTCCTTGTCCTGA 155059 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| ||||||||| | |||||| ||||| Sbjct 155058 ATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGACTCCACCTCAAGGGTAATAGTCTTT 154999 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| ||| ||||| || || |||||| Sbjct 154998 CCGGTCAAAGTTTTCACGAAAATCTGCATG 154969 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||| ||||||||||||||||| ||| ||| |||| || Sbjct 155631 ACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCA 155572 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| || |||||||| | ||||||||||||| Sbjct 155571 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGG 155512 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||| ||| || || | ||||| ||||| Sbjct 155511 ATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACTTCAAGAGTAATAGTCTTT 155452 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||| || || ||||| Sbjct 155451 CCAGTCAATGTCTTCACGAAAATCTGCAT 155423 >seq492 Length=1085467 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| ||||||||||||||||| ||| || |||| || || || || || ||||| Sbjct 147861 CTCTTTCTGAATGTTGTAGTCACTCAAAGTACGTCCGTCCTCAAGCTGCTTCCCAGCGAA 147920 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| || |||||||| | ||||||||||||| ||| || |||||| Sbjct 147921 AATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGTCTTAACATT 147980 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| ||| || || | ||||||||||| || |||| ||||||||| Sbjct 147981 CTCGATTGTGTCCGAGGACTCAACTTCAAGCGTAATCGTCTTTCCTGTCAAAGTCTTCAC 148040 Query 45325 AAAGATTTGCATG 45337 ||| || |||||| Sbjct 148041 AAAAATCTGCATG 148053 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||| ||| ||| ||| | || || || || || || ||||| Sbjct 146949 CTCCTTCTGGATGTTGTAATCGCTCAAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAA 147008 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| |||||||| || | ||||||||||||| || || ||| || Sbjct 147009 AATCAGACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTTGGTCTTCACATT 147068 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| ||||||||| | ||||||||||| ||||| || |||||||| Sbjct 147069 TTCAATGGTGTCCGACGACTCCACCTCAAGCGTAATCGTCTTACCCGTAAGCGTCTTCAC 147128 Query 45325 AAAGATTTGCAT 45336 ||| || ||||| Sbjct 147129 AAAAATCTGCAT 147140 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||| ||||| |||||||||||| ||| ||| | || || Sbjct 147160 ACCAAGTGCAGTGTAGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTACGACCATCCTCA 147219 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||||||||| | |||||||||||| | Sbjct 147220 AGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGA 147279 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | | ||| ||| || || | |||||||| || Sbjct 147280 ATTTTCGTCTTCACATTCTCTATCGTATCCGATGACTCAACTTCAAGCGTAATCGTTTTT 147339 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||||| || ||||| Sbjct 147340 CCAGTCAATGTCTTCACAAAAATCTGCAT 147368 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||||||||||||||| ||| ||| |||| || Sbjct 148072 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCA 148131 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| ||||| || || | || ||||||||| Sbjct 148132 AGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGG 148191 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | ||||| ||| ||||| | || || || ||| Sbjct 148192 ATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTTG 148251 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || |||||||||||||| |||||| Sbjct 148252 CCCGTGAGGGTCTTCACAAAGATCTGCATG 148281 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||||||||||||||| ||| ||| |||| || Sbjct 148300 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCA 148359 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| ||||| || || | || ||||||||| Sbjct 148360 AGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGG 148419 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | ||||| ||| ||||| | || || || ||| Sbjct 148420 ATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTTG 148479 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || |||||||||||||| |||||| Sbjct 148480 CCCGTGAGGGTCTTCACAAAGATCTGCATG 148509 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||||||||||||||| ||| ||| |||| || Sbjct 148528 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCA 148587 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| ||||| || || | || ||||||||| Sbjct 148588 AGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGG 148647 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | ||||| ||| ||||| | || || || ||| Sbjct 148648 ATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTTG 148707 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || |||||||||||||| |||||| Sbjct 148708 CCCGTGAGGGTCTTCACAAAGATCTGCATG 148737 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| ||||||||||||||||| ||| ||| | || || || || || || ||||| Sbjct 147405 CTCTTTCTGAATGTTGTAGTCACTCAAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAA 147464 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| ||||||||||| | |||||||||||| ||| || ||| || Sbjct 147465 AATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGAATCTTAGTCTTCACGTT 147524 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | | ||| ||| || || | || || || || || |||| |||||||| Sbjct 147525 CTCAATGGTATCCGATGACTCAACTTCAAGCGTTATAGTTTTTCCAGTCAATGTCTTCAC 147584 Query 45325 AAAGATTTGCAT 45336 ||| || ||||| Sbjct 147585 AAAAATCTGCAT 147596 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| ||||| ||||||||||| ||| || |||| || || || || || ||||| Sbjct 147633 CTCTTTCTGGATGTTGTAGTCACTCAAGGTACGTCCGTCCTCAAGCTGCTTCCCAGCGAA 147692 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||||||||| | |||||||||||| || || ||| || Sbjct 147693 GATGAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGGATCTTAGTCTTCACGTT 147752 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | | ||| ||| || || | |||||||| || || |||| |||||||| Sbjct 147753 CTCAATGGTATCCGATGACTCAACTTCAAGCGTAATCGTTTTTCCAGTCAATGTCTTCAC 147812 Query 45325 AAAGATTTGCAT 45336 ||| || ||||| Sbjct 147813 AAAAATCTGCAT 147824 >seq475 Length=1546706 Score = 105 bits (116), Expect = 5e-18 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGT 45185 ||||| || || || |||||| || ||||| || || || ||| || ||||| | Sbjct 934412 ACCAAATGGAGGGTTGACTCCTTTTGGATGTTATAATCCGACAAGGTT--CGGTCGTCCT 934469 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 ||| ||| |||||||| || |||| ||||||||||| |||| | ||||||||||| Sbjct 934470 CCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGAATGCCCTCCTTGTCTT 934529 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 || ||| ||| || || ||| ||||| || ||||| | ||| || |||| Sbjct 934530 GGATCTTTGACTTGACATTTGCAACGTTGTCCGACGATTCTACCTCAAGGGTGATGGTCT 934589 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTCAA 45346 | || || |||||||| || || || |||||| ||||| || Sbjct 934590 TCCCGGTTAGAGTCTTGACGAAAATCTGCATGGTGCCTGAA 934630 >seq99 Length=379092 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || |||||| || |||||||| ||| || | || ||||| ||| Sbjct 173876 ACCAAATGGAGGGTTGACTCCTT-TGGATGTTGTAATCGACAAGGTT-CGGTCGTCCTCC 173933 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| |||||||| || |||| ||||||||||| |||| | ||||||||||| Sbjct 173934 AATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGAATGCCCTCCTTGTCTTGG 173993 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || || | | ||||| || ||||| | ||| || ||||| Sbjct 173994 ATCTTTGACTTGACATTTGCAATGTTGTCCGATGATTCTACCTCAAGGGTGATGGTCTTC 174053 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTCAA 45346 || || |||||||| || || || |||||| ||||| || Sbjct 174054 CCGGTTAGAGTCTTGACGAAAATCTGCATGGTGCCTGAA 174092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395069792778583