Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq489 84.2 2e-11 seq28 84.2 2e-11 >seq489 Length=1032923 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| ||| |||||||| || || || || | || | ||| || ||||| ||| Sbjct 355098 AAACAAGCATGCTCACAATGCAATCCCTCATCACGTGAGATCAATTCGTTCGAAAACGTT 355039 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 ||||| | |||||| || ||||| || | | || || ||| ||| || || || ||| Sbjct 355038 AATCCAGACATCAACCCGCGTTTCTTCAAGTAGAAAATCGCACAAAACGACCCTGAGAAG 354979 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTAC 11775 || || ||||||||||||||||| || || Sbjct 354978 AAAATCCCCTCCACAGCTGCAAACGCCAC 354950 >seq28 Length=612614 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| ||| |||||||| || || || || | || | ||| || ||||| ||| Sbjct 279201 AAACAAGCATGTTCACAATGCAATCCCTCATCACGTGAGATCAATTCGTTCGAAAACGTT 279260 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 ||||| | |||||| || ||||| || | | || || ||| ||| || || || ||| Sbjct 279261 AATCCAGACATCAACCCGCGTTTCTTCAAGTAGAAAATCGCACAAAACGACCCTGAGAAG 279320 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTAC 11775 || || ||||||||||||||||| || || Sbjct 279321 AAAATCCCCTCCACAGCTGCAAACGCCAC 279349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468518223083120