Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq191 111 1e-19 seq708 95.1 1e-14 >seq191 Length=259989 Score = 111 bits (122), Expect = 1e-19 Identities = 436/675 (65%), Gaps = 8/675 (1%) Strand=Plus/Plus Query 20931 TCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTC 20990 |||| ||| |||||||| || || | ||| ||||| || ||||||||||| ||| | Sbjct 120607 TCAATGTGATTGTTGTACACATGTGTGTCCCCCAACACATGGACAAAGTCTCCGGGGTTG 120666 Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || || || | ||||| ||| | || || |||| || || || || ||||| Sbjct 120667 AGCCCTGTCACCTTGGCGATTAGACATGTTAGCAGGGAATAAGATGCTATATTGAACGGT 120726 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 ||||| || ||||||||| ||| | ||||||| || || || ||||| || || Sbjct 120727 ACCCCAAGTCCCATGTCGCAGGAGCGTTGGTACATTTGACATGATAGCTCGCCGTTTGCG 120786 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC-CGCGCGAGGTCCGCGGG 21169 || || ||||| | || ||| || || || || |||||| | | || | | || Sbjct 120787 ACATAGAACTGGGCTAGAAGGTGGCACGGTGGAAGTGCCATCTTGTCAGTGGCACAC-GG 120845 Query 21170 GTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCAC 21229 |||||| || | || | || |||| |||| || | |||| || | || Sbjct 120846 GTTCCAAGCTGAAATGATCATTCGCCTGTCGTTTGGGTTATTAACAATTGTGTCAATTAC 120905 Query 21230 GTAACGCAGCTGGTCCACCCCCTGACCCTC-GTAGTTGGCGTCGGCCCCCCTGTACTCCG 21288 | | || ||| ||| |||| | ||||| ||||| | || | ||||||| Sbjct 120906 ATCAGTCAACTGATCCTTCCCC-GCCCCTCTGTAGTCGCAATCCTTGTTTGTATACTCCG 120964 Query 21289 CCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCC 21348 | ||||| |||| ||| || || || ||||| || || || || ||||| || || Sbjct 120965 CGCCAAAGTGTCGCCATTGAAATCCATACACGGGACCAAGGTCTCCCTCTTCCCGATCTG 121024 Query 21349 CGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGC 21408 || ||| | | |||||||| || || | | ||||||||| || || | Sbjct 121025 TAAACCCCCGAGAGTCCAAAAAGCTTTTTGATCCATTTCCTTCCCAAATTCGGAC-CCCC 121083 Query 21409 GGCGC-GACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACG 21467 | | | ||| ||| || ||| ||| | |||||||| | | ||||||| | Sbjct 121084 TTCTCTGTCAGCAATTTGGCATCAGTGCTTCCCTTAATAAACCAAAAAAGCTCCTCCGCA 121143 Query 21468 ACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTTATAT 21527 || |||| ||||||||| | ||||| || | || || || || | | || || Sbjct 121144 ACACCCCGCCAAAACACTCGCTTGGTCGTGAGAAGCGGGAAGGATTCTCGCAAATTGAAT 121203 Query 21528 CGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTCTG-CAC 21586 || || ||||||||| ||| ||| || |||||||| | | |||||| || || Sbjct 121204 CGCATTTGCTCCCCGAACACTGACAAGGTTCCGACGCCCGTGC-GATCTCCCTTTGATAC 121262 Query 21587 GCCGTGTTTAATAAT 21601 |||| | ||||||| Sbjct 121263 TCCGTTTGTAATAAT 121277 >seq708 Length=363590 Score = 95.1 bits (104), Expect = 1e-14 Identities = 434/675 (64%), Gaps = 10/675 (1%) Strand=Plus/Minus Query 20931 TCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTC 20990 |||| ||| |||||||| || || | ||| ||||| || ||||||||||| || | Sbjct 200922 TCAATGTGATTGTTGTACACATGTGTGTCCCCCAACACATGGACAAAGTCTCCGGGTTTG 200863 Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || || || | ||||| ||| | || || || | || || || || ||||| Sbjct 200862 AGCCCTGTCACCTTGGCGATTAGACATGTTAGCAGCGAATAAGATGCTATATTGAACGGT 200803 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 ||||| || ||||||||| ||| | ||||||| || || || ||||| || || Sbjct 200802 ACCCCAAGTCCCATGTCGCAGGAGCGTTGGTACATTTGACATGATAGCTCGCCGTTTGCG 200743 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC-CGCGCGAGGTCCGCGGG 21169 || || ||||| | || ||| || || || || |||||| | | || | | || Sbjct 200742 ACATAGAACTGGGCTAGAAGGTGGCACGGTGGAAGTGCCATCTTGTCAGTGGCACAC-GG 200684 Query 21170 GTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCAC 21229 |||||| || | || | || |||| |||| || | |||| | | ||| Sbjct 200683 GTTCCAAGCTGAAATGATCATTCGCCTGTCGTTTGGGTTATTAACAATTGTGTTAATCAC 200624 Query 21230 GTAACGCAGCTGGTCCACCCCCTGACCCTC-GTAGTTGGCGTCGGCCCCCCTGTACTCCG 21288 | | || ||| ||| |||| | ||||| ||||| | | || | ||||||| Sbjct 200623 ATCAGTCAACTGATCCTTCCCC-GCCCCTCTGTAGTCGCCATCCTTGTTTGTATACTCCG 200565 Query 21289 CCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCC 21348 | ||||| |||| ||| || || || ||||| || || || || ||||| || | | Sbjct 200564 CGCCAAAGTGTCGCCATTGAAATCCATACACAGGACCAAGGTCTCCCTCTTCCCGAT-CT 200506 Query 21349 CGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGC 21408 || ||| | | |||||||| || || | | ||||||||| || || | Sbjct 200505 GTAAACCCCGAGAGTCCAAAAAGCTTTTTGATCCATTTCCTTCCCAAATTCGGAC-CCCC 200447 Query 21409 GGCGC-GACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACG 21467 | | | ||| ||| || ||| ||| | |||||||| | | ||||||| | Sbjct 200446 TTCTCTGTCAGCAGTTTGGCATCAGTGCTTCCCTTAATAAACCAAAAAAGCTCCTCCGCA 200387 Query 21468 ACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTTATAT 21527 || ||| ||||||||| | ||||| || | || || || || | | || || Sbjct 200386 AC-ACCCGCCAAAACACTCGCTTGGTCGTGAGAAGCGGGAAGGATTCTCGCAAATTGAAT 200328 Query 21528 CGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTCTG-CAC 21586 || || ||||||||| ||| ||| || |||||||| | | |||||| || || Sbjct 200327 CGCATTTGCTCCCCGAACACTGACAAGGTTCCGACGCCCGTGC-GATCTCCCTTTGATAC 200269 Query 21587 GCCGTGTTTAATAAT 21601 |||| | ||||||| Sbjct 200268 TCCGTTTGTAATAAT 200254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427770145217040