Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq492 125 7e-24 seq557 114 1e-20 >seq492 Length=1085467 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | |||||| || | || | ||||||||||| |||||||| || || ||| Sbjct 147826 CCACCTCGAAGACGCAACACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTC 147885 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || ||||| || ||||| | |||||||| |||||||||||||| Sbjct 147886 AAAGTACGTCCGTCCTCAAGCTGCTTCCCAGCGAAAATCAGACGCTGCTGATCGGGAGGA 147945 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| | || || ||| | | || | |||||| | || ||| || Sbjct 147946 ATACCCTCCTTGTC-CTGAATCTTCGTCTTAACATTCTCGATTGTGTCCGAGGACTCAAC 148004 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | |||||| || ||||| || || || || || ||||| Sbjct 148005 TTCAAGCGTAATCGTCTTTCCTGTCAAAGTCTTCACAAAAATCTGCAT 148052 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||||| |||||||| || || ||||| ||||||||| Sbjct 146914 CCGCCGCGCAGACGGAGCACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 146973 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || ||||| || ||||| | |||||||| ||||| ||||| || Sbjct 146974 AAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGGA 147033 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | ||| | ||||| | | ||||||| Sbjct 147034 ATACCCTCCTTGTCCTGGATCTTGGTCTTCACATTTTCAATGGTGTCCGACGACTCCACC 147093 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | |||||| || || | ||| || || || || |||||| Sbjct 147094 TCAAGCGTAATCGTCTTACCCGTAAGCGTCTTCACAAAAATCTGCATA 147141 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || ||||| | ||||||||||| || ||||| || |||||| Sbjct 147142 CCGCCCCGGAGGCGAAGCACCAAGTGCAGTGTAGACTCTTTCTGGATGTTGTAGTCGCTC 147201 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || ||||| || ||||| | |||||||| ||||| |||||||| Sbjct 147202 AAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGA 147261 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| |||| || || | | || | || || | | ||| || Sbjct 147262 ATTCCCTCCTTGTC-CTGAATTTTCGTCTTCACATTCTCTATCGTATCCGATGACTCAAC 147320 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | ||| || || ||||| || || || || || |||||| Sbjct 147321 TTCAAGCGTAATCGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCATA 147369 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| |||||||| || || |||| || | || || ||||| || ||| Sbjct 147400 GTAGACTCTTTCTGAATGTTGTAGTCACTCAAGGTACGACCATCCTCAAGCTGCTTGCCA 147459 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | |||||||| ||||| |||||||| || || || ||||| ||| | || || || Sbjct 147460 GCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTC-CTGAATCTTAGTCTT 147518 Query 139688 AGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | |||| || | || || | | ||| || |||| || | || || || ||||| | Sbjct 147519 CAC-GTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTTATAGTTTTTCCAGTCAATG 147577 Query 139746 TTTTTACGAATATTTGCATA 139765 | || || || || |||||| Sbjct 147578 TCTTCACAAAAATCTGCATA 147597 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| || || |||| || | ||| || ||||| || ||| Sbjct 147628 GTAGACTCTTTCTGGATGTTGTAGTCACTCAAGGTACGTCCGTCCTCAAGCTGCTTCCCA 147687 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| |||||||| || || || ||||| || | || || || Sbjct 147688 GCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTC-CTGGATCTTAGTCTT 147746 Query 139688 AGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | |||| || | || || | | ||| || |||| || | ||| || || ||||| | Sbjct 147747 CAC-GTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTAATCGTTTTTCCAGTCAATG 147805 Query 139746 TTTTTACGAATATTTGCATA 139765 | || || || || |||||| Sbjct 147806 TCTTCACAAAAATCTGCATA 147825 >seq557 Length=252103 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||||| || ||||| || |||||||| || || || Sbjct 155195 GCCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACT 155136 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||| || ||||| || || || ||||||| || |||||||| || | Sbjct 155135 CAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGGG- 155077 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCA 139715 |||||||| ||||| ||| | || || || | | || | ||||| | || ||||| Sbjct 155076 -ATGCCTTCCTTGTCC-TGAATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGACTCCA 155019 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | ||||| |||||||| ||||| ||||| || ||||| Sbjct 155018 CCTCAAGGGTAATAGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 154970 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||||| || |||||||| |||||||| || || || Sbjct 155650 GCCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACT 155591 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||| || ||||| || || || | |||||||| |||||||||||||| Sbjct 155590 CAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGG 155531 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | || || | | ||| || Sbjct 155530 AATACCCTCCTTGTCCTGGATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAAC 155471 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | ||||| || ||||| || || ||||| || |||||| Sbjct 155470 TTCAAGAGTAATAGTCTTTCCAGTCAATGTCTTCACGAAAATCTGCATA 155422 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||||| || |||||||| |||||||| || || || Sbjct 155878 GCCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACT 155819 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||| || ||||| || || || | |||||||| |||||||||||||| Sbjct 155818 CAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGG 155759 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | || || | | ||| || Sbjct 155758 AATACCCTCCTTGTCCTGGATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAAC 155699 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || |||||||| || || || || ||||| Sbjct 155698 TTCAAGCGTAATAGTCTTTCCAGTCAACGTCTTCACAAAAATCTGCAT 155651 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| |||| || | ||||||||||| || || || || || |||| || | Sbjct 156321 CGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGGTTCGGCCA 156262 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || ||||| | |||| ||| ||||| |||||||| || || || || Sbjct 156261 TCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTA 156202 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAA-CGGTCAC 139728 || || | || || || | || || || || | | ||| || |||| |||| | Sbjct 156201 TC-CTGGATCTTGGTCTTCACATTTTCATCGTATCCGATGACTCAACTTCAAGCGGTAAT 156143 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || |||||||| || ||||| || |||||| Sbjct 156142 AGTCTTTCCAGTCAACGTCTTAACGAAAATCTGCATA 156106 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| |||| || | ||||||||||| || || || || || |||| || | Sbjct 156093 CGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGGTTCGGCCA 156034 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || ||||| | |||| ||| ||||| |||||||| || || || || Sbjct 156033 TCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTA 155974 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| | | |||||||||| || | | Sbjct 155973 TCCTGGATCTTGGTCTTCACATTTTCAATCGTGTCCGACGATTCCACCTCAAGCGTAATC 155914 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | ||| || || || || ||||| Sbjct 155913 GTCTTACCCGTAAGCGTCTTCACAAAAATCTGCAT 155879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496057036501600