Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq864 223 5e-53 seq932 219 6e-52 >seq864 Length=1598700 Score = 223 bits (246), Expect = 5e-53 Identities = 624/964 (65%), Gaps = 2/964 (0%) Strand=Plus/Plus Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 ||||| |||| | || | || |||| || || ||||| ||||||| | | Sbjct 469113 ACAAATTTGTTGAGTGCAATGGAGGCCAANTTGCACACGGCAACCTCATCGGGTGAGGTG 469172 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 |||| || || ||||| || | || || |||||| || | || || || || Sbjct 469173 TATTCAATAATCTCAGTACACAAATTNGAGCAACGAATGGTACCGAGGTTCTGCTGGTTG 469232 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 ||||| ||||||| | ||||||||| || ||| | || || || || |||||||| | Sbjct 469233 CTCTTCCTGTTACAGGAATCCTTATANAGCATGTATGGGGTTCCGGTCTCAATCTGCGCC 469292 Query 79780 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTT 79839 || | ||| || | ||| || || || | || | | | | || | || | | Sbjct 469293 TCCAAAATAGCGTACCAAACCTTNCGCGCNTCAATCTTNGCCCTTGCTCGCCCTTGTTTC 469352 Query 79840 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899 ||||||| | || | || || ||| | || ||||||| | | || || Sbjct 469353 TCGTATTTCATGTANAGCTCCTCAAATTCGNCACCATAAACATCAGCCAGACCGGGTGCC 469412 Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCA 79959 || | ||||| | | ||||| ||| |||| || | ||||||||| | ||| Sbjct 469413 TCATTCGGACAGAAGAGGGACCATGAANCATTTTCCTCNACCCTTTTCATAAACAAATCN 469472 Query 79960 GGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 80018 |||||||| || | ||| || ||||| || | | ||||| || || || |||||| Sbjct 469473 GGAATCCAGAGNCC-ATAGAAGAGATCCCTTGCACGCTGCTCTTCCTTGCCATGATTCTT 469531 Query 80019 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 80078 | || || || | | ||| || | |||||| || |||||||| || || | | Sbjct 469532 CCNCAAGTCTAGNAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAAAGGC 469591 Query 80079 TCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 80138 ||| || || || |||||||| | || || ||||||| ||| || || || | Sbjct 469592 GCCCTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCCTNAG 469651 Query 80139 CATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 80198 ||| || | ||| |||||||| ||||||||||| || |||||| | | || | | Sbjct 469652 CATNGGGACAATTCCATTGGAAGTACCATTGGTGCCTCGAATATAGGACCGAGTGCCCCT 469711 Query 80199 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 80258 || || | | || || || || || || || || || | || || || || Sbjct 469712 GATGTTGTGGACGGCGAGGCCGATACCGCCGGCAGACTTTGAAATGACGGCACANCGNTT 469771 Query 80259 TAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGA 80318 | || || || ||||| || || ||||||| |||| | |||| ||| || || || Sbjct 469772 CANNGTGTCGTAAATGCCTTCGATAGAATCATCAGTCATAGTGAGTAAAAAGCAACTNGA 469831 Query 80319 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 80378 || || |||||| || |||||||| || || ||||| || || || || || || Sbjct 469832 CAGCTGAGGACGACAGGTACCCGCATTGAACAAAGTAGGNGANGCATGTGTGAAGAGCTT 469891 Query 80379 TTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTAC 80438 || || | ||| || | | | | || || || | ||||||| || || Sbjct 469892 NCGTGAGAGAGCGTCGTAGGTGTTGAGAATGGCCTCCATGTCACCGAGATGAATGCCAAC 469951 Query 80439 CGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAA 80498 || || | ||| | ||| ||||| || | ||||| ||||| || | ||| ||| ||| Sbjct 469952 CGAAACCCTCATNAGCATATGCTGCGGACGCTCAACAATCTTATTGTCAATTCTCAGCAA 470011 Query 80499 GTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 80558 ||| || |||||||||| ||||| || ||||| | ||| |||||||| || |||||||| Sbjct 470012 GTAGGACCTTTCCAAAGTCTTAAANCCNAAATAATCGTACGAAAAGTCACGATCGTAAAT 470071 Query 80559 AATA 80562 ||| Sbjct 470072 GATA 470075 >seq932 Length=795108 Score = 219 bits (242), Expect = 6e-52 Identities = 631/964 (65%), Gaps = 5/964 (1%) Strand=Plus/Minus Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 ||||| |||| | || | || |||| ||| || ||||| ||||||| | | Sbjct 206636 ACAAATTTGTTGAGTGCAATGGAGGCCAAATTGCACACGGCAACCTCATCGGGTGAGGTG 206577 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 |||| || || ||||| || | || || |||||| || | || || || || Sbjct 206576 TATTCAATAATCTCAGTACACAAATTTGAGCAACGAATGGTACCGAGGTTCTGCTGGTTG 206517 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 ||||| ||||||| | ||||||||| || ||| | || || || || |||||||| | Sbjct 206516 CTCTTCCTGTTACAGGAATCCTTATAGAGCATGTATGGGGTTCCGGTCTCAATCTGCGCC 206457 Query 79780 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTT 79839 || | ||| || | ||| || ||| || | || | | | | || | || | | Sbjct 206456 TCCAAAATAGCGTACCAAACCTTTCGCGCATCAATCTTTGCCCTTGCTCGCCCTTGTTTC 206397 Query 79840 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899 ||||||| | || | || || ||||| || ||||||| | | || || Sbjct 206396 TCGTATTTCATGTAGAGCTCCTCAAATTCGTCACCATAAACATCAGCCAGACCGGGTGCC 206337 Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCA 79959 || | ||||| | | ||||| ||| |||| || | ||||||||| | ||| Sbjct 206336 TCATTCGGACAGAAGAGGGACCATGAAGCATTTTCCTCGACCCTTTTCATAAACAAATCT 206277 Query 79960 GGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 80018 |||||||| || | ||| || ||||| || | | ||||| || || || |||||| Sbjct 206276 GGAATCCAGAGTCC-ATAGAAGAGATCCCTTGCACGCTGCTC-TCCTTGCCATGATTCTT 206219 Query 80019 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 80078 | || ||||| | | ||| || | |||||| || |||||||| || || | | Sbjct 206218 CCGCAAGTCTAGGAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAAAGGC 206159 Query 80079 TCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 80138 ||| || || || |||||||| | || || ||||||| ||| || || || | Sbjct 206158 GCCCTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCCTGAG 206099 Query 80139 CATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 80198 ||| || | ||| |||||||| ||||||||||| || |||||| | | || | | Sbjct 206098 CATAGGGACAATTCCATTGGAAGTACCATTGGTGCCTCGAATATAGGACCGAGTGCCCCT 206039 Query 80199 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 80258 || || | | || || || || || || || || || | || || || || Sbjct 206038 GATGTTGTGGACGGCGAGGCCGATACCGCCGGCAGACTTTGAAATGACGGCACAACG-TT 205980 Query 80259 TAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGA 80318 | | || || || ||||| || || ||||||| |||| | |||| ||| || || || Sbjct 205979 TCAGGTGTCGTAAATGCCTTCGATAGAATCATCAGTCATAGTGAGTAAAAAGCAACT-GA 205921 Query 80319 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 80378 || || |||||| || |||||||| || || ||||| ||||| || || || || Sbjct 205920 CAGCTGAGGACGACAGGTACCCGCATTGAACAAAGTAGGTGAAGCATGTGTGAAGAGCTT 205861 Query 80379 TTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTAC 80438 || || | ||| || | | | | || || || | ||||||| || || Sbjct 205860 GCGTGAGAGAGCGTCGTAGGTGTTGAGAATGGCCTCCATGTCACCGAGATGAATGCCAAC 205801 Query 80439 CGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAA 80498 || || | ||| | ||| ||||| || | ||||| ||||| || | ||| ||| ||| Sbjct 205800 CGAAACCCTCATAAGCATATGCTGCGGACGCTCAACAATCTTATTGTCAATTCTCAGCAA 205741 Query 80499 GTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 80558 ||| || |||||||||| ||||| |||||||| | ||| |||||||| || |||||||| Sbjct 205740 GTAGGACCTTTCCAAAGTCTTAAACCCAAAATAATCGTACGAAAAGTCACGATCGTAAAT 205681 Query 80559 AATA 80562 ||| Sbjct 205680 GATA 205677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718258717301720