Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq932 228 1e-54 seq864 228 1e-54 >seq932 Length=795108 Score = 228 bits (252), Expect = 1e-54 Identities = 626/950 (66%), Gaps = 7/950 (1%) Strand=Plus/Minus Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757 |||| || |||| ||| || ||||| ||||||| | || |||| ||||| ||| Sbjct 206621 GCAATGGAGGCCAAATTGCACACGGCAACCTCATCGGGTGAGGTGTATTCAATAATCTCA 206562 Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817 || || | ||| || ||||| || | || || || || ||||| ||||||| Sbjct 206561 GTACACAAATTTGAGCAACGAATGGTACCGAGGTTCTGCTGGTTGCTCTTCCTGTTACAG 206502 Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 | ||||||||| || || | || || || || |||||||| | || | ||| || | | Sbjct 206501 GAATCCTTATAGAGCATGTATGGGGTTCCGGTCTCAATCTGCGCCTCCAAAATAGCGTAC 206442 Query 71878 CAGACGACTCGAGCCTTTAT-TATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATA 71936 || || ||| || | || | | |||| || | || | | ||||||| | || Sbjct 206441 CAAACCTTTCGCGCATCAATCTTTGCCCTTGC-TCGCCCTTGTTTCTCGTATTTCATGTA 206383 Query 71937 TAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACAT 71996 | || || ||||| || || ||| | | || || ||||||||||| | Sbjct 206382 GAGCTCCTCAAATTCGTCACCATAAACATCAGCCAGACCGGGTGCCTCATTCGGACAGAA 206323 Query 71997 CAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 72056 | ||||| ||| || | || | ||||||||| | ||| |||||||| || | Sbjct 206322 GAGGGACCATGAAGCATTTTCCTCGACCCTTTTCATAAACAAATCTGGAATCCAGAG-TC 206264 Query 72057 TATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 72115 ||| || ||||| || | | |||| ||| || || |||||| | || |||| Sbjct 206263 CATAGAAGAGATCCCTTGCACGCTGCT-CTCCTTGCCATGATTCTTCCGCAAGTCTAGGA 206205 Query 72116 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGT 72175 | | | ||| || | |||||| || |||||||| || || | | ||| || || Sbjct 206204 AATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAAAGGCGCCCTTACGCTTCC 206145 Query 72176 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 72235 || |||||||| | || || ||||||| ||| || || || | ||| || | ||| | Sbjct 206144 CGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCCTGAGCATAGGGACAATTC 206085 Query 72236 CATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTG 72295 ||||||| | ||||||||| || |||||| | | || | | || ||| | | Sbjct 206084 CATTGGAAGTACCATTGGTGCCTCGAATATAGGACCGAGTGCCCCTGATGTTGTGGACGG 206025 Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355 || || || || || || || || || | || || || ||| | || || || | Sbjct 206024 CGAGGCCGATACCGCCGGCAGACTTTGAAATGACGGCACAACG-TTTCAGGTGTCGTAAA 205966 Query 72356 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415 |||| || ||| |||||| |||| | |||| ||| || || |||| || |||||| Sbjct 205965 TGCCTTCGATAGAATCATCAGTCATAGTGAGTAAAAAGCAACT-GACAGCTGAGGACGAC 205907 Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 || |||||||| || || ||||| ||||| || || || || || || | Sbjct 205906 AGGTACCCGCATTGAACAAAGTAGGTGAAGCATGTGTGAAGAGCTTGCGTGAGAGAGCGT 205847 Query 72476 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | | | | || || || | |||| || || |||| || | ||| | Sbjct 205846 CGTAGGTGTTGAGAATGGCCTCCATGTCACCGAGATGAATGCCAACCGAAACCCTCATAA 205787 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||||||||| || | ||||| ||||| || | ||| ||| ||||||||| |||||| Sbjct 205786 GCATATGCTGCGGACGCTCAACAATCTTATTGTCAATTCTCAGCAAGTAGGACCTTTCCA 205727 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 72645 |||| ||||| |||||||| | ||| |||||||| || |||||||| ||| Sbjct 205726 AAGTCTTAAACCCAAAATAATCGTACGAAAAGTCACGATCGTAAATGATA 205677 >seq864 Length=1598700 Score = 228 bits (252), Expect = 1e-54 Identities = 616/949 (65%), Gaps = 2/949 (0%) Strand=Plus/Plus Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757 |||| || |||| || || ||||| ||||||| | || |||| ||||| ||| Sbjct 469128 GCAATGGAGGCCAANTTGCACACGGCAACCTCATCGGGTGAGGTGTATTCAATAATCTCA 469187 Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817 || || | ||| || ||||| || | || || || || ||||| ||||||| Sbjct 469188 GTACACAAATTNGAGCAACGAATGGTACCGAGGTTCTGCTGGTTGCTCTTCCTGTTACAG 469247 Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 | ||||||||| || || | || || || || |||||||| | || | ||| || | | Sbjct 469248 GAATCCTTATANAGCATGTATGGGGTTCCGGTCTCAATCTGCGCCTCCAAAATAGCGTAC 469307 Query 71878 CAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATAT 71937 || || || || | || | | | || | || | | ||||||| | || Sbjct 469308 CAAACCTTNCGCGCNTCAATCTTNGCCCTTGCTCGCCCTTGTTTCTCGTATTTCATGTAN 469367 Query 71938 AATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATC 71997 | || || ||| | || || ||| | | || || ||||||||||| | Sbjct 469368 AGCTCCTCAAATTCGNCACCATAAACATCAGCCAGACCGGGTGCCTCATTCGGACAGAAG 469427 Query 71998 AATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 72057 | ||||| ||| || | || | ||||||||| | ||| |||||||| || | Sbjct 469428 AGGGACCATGAANCATTTTCCTCNACCCTTTTCATAAACAAATCNGGAATCCAGAG-NCC 469486 Query 72058 ATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 ||| || ||||| || | | ||||| || || || |||||| | || || || Sbjct 469487 ATAGAAGAGATCCCTTGCACGCTGCTCTTCCTTGCCATGATTCTTCCNCAAGTCTAGNAA 469546 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | ||| || | |||||| || |||||||| || || | | ||| || || Sbjct 469547 ATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAAAGGCGCCCTTACGCTTCCC 469606 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 || |||||||| | || || ||||||| ||| || || || | ||| || | ||| || Sbjct 469607 GCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCCTNAGCATNGGGACAATTCC 469666 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||| | ||||||||| || |||||| | | || | | || ||| | | Sbjct 469667 ATTGGAAGTACCATTGGTGCCTCGAATATAGGACCGAGTGCCCCTGATGTTGTGGACGGC 469726 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 || || || || || || || || || | || || || || | || || || || Sbjct 469727 GAGGCCGATACCGCCGGCAGACTTTGAAATGACGGCACANCGNTTCANNGTGTCGTAAAT 469786 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 ||| || ||| |||||| |||| | |||| ||| || || |||| || |||||| Sbjct 469787 GCCTTCGATAGAATCATCAGTCATAGTGAGTAAAAAGCAACTNGACAGCTGAGGACGACA 469846 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 || |||||||| || || ||||| || || || || || || || || | Sbjct 469847 GGTACCCGCATTGAACAAAGTAGGNGANGCATGTGTGAAGAGCTTNCGTGAGAGAGCGTC 469906 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||| || | | | | || || || | |||| || || |||| || | ||| | Sbjct 469907 GTAGGTGTTGAGAATGGCCTCCATGTCACCGAGATGAATGCCAACCGAAACCCTCATNAG 469966 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||||||||| || | ||||| ||||| || | ||| ||| ||||||||| ||||||| Sbjct 469967 CATATGCTGCGGACGCTCAACAATCTTATTGTCAATTCTCAGCAAGTAGGACCTTTCCAA 470026 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 72645 ||| ||||| || ||||| | ||| |||||||| || |||||||| ||| Sbjct 470027 AGTCTTAAANCCNAAATAATCGTACGAAAAGTCACGATCGTAAATGATA 470075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671129778883480