Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq492 120 3e-22 seq557 98.7 1e-15 seq489 87.8 2e-12 seq28 87.8 2e-12 >seq492 Length=1085467 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | |||||| || | ||| | |||||| ||||| || |||||||| || ||| Sbjct 147826 CCACCTCGAAGACGCAACACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTC 147885 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| || || || || ||||| | |||||||| |||||||||||||| Sbjct 147886 AAAGTACGTCCGTCCTCAAGCTGCTTCCCAGCGAAAATCAGACGCTGCTGATCGGGAGGA 147945 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| | | | || || ||| | | || | ||||||| || || || Sbjct 147946 ATACCCTCCTTGTC-CTGAATCTTCGTCTTAACATTCTCGATTGTGTCCGAGGACTCAAC 148004 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || | |||||| || ||||| || || || || || ||||| Sbjct 148005 TTCAAGCGTAATCGTCTTTCCTGTCAAAGTCTTCACAAAAATCTGCAT 148052 >seq557 Length=252103 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || | |||| || || ||||| || |||||||| || || Sbjct 155650 GCCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACT 155591 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||| || || || || || || | |||||||| |||||||||||||| Sbjct 155590 CAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGG 155531 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || || | | || | ||| |||| | || || Sbjct 155530 AATACCCTCCTTGTCCTGGATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAAC 155471 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| ||| | ||||| || |||||||| || ||||| || |||||| Sbjct 155470 TTCAAGAGTAATAGTCTTTCCAGTCAATGTCTTCACGAAAATCTGCATA 155422 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| ||||| || || || ||||||||||||||| Sbjct 156559 CCGCCGCGCAGACGGAGCACAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 156500 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | || || || || || ||||| | |||||||| ||||| ||||| || Sbjct 156499 AAAGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGGA 156440 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || || || | | ||| | |||||||| | || ||| Sbjct 156439 ATACCCTCCTTGTCCTGGATCTTGGTCTTCACATTTTCAATCGTGTCCGATGACTCAACT 156380 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||||| || ||||| || || ||||| || |||||| Sbjct 156379 TCAAGCGTAATAGTCTT-CCAGTCAACGTCTTAACGAAAATCTGCATA 156333 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || | |||| || || ||||| || |||||||| || || Sbjct 155878 GCCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACT 155819 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||| || || || || || || | |||||||| |||||||||||||| Sbjct 155818 CAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGG 155759 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || || | | || | ||| |||| | || || Sbjct 155758 AATACCCTCCTTGTCCTGGATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAAC 155699 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || | ||||| || ||||| || || || || || ||||| Sbjct 155698 TTCAAGCGTAATAGTCTTTCCAGTCAACGTCTTCACAAAAATCTGCAT 155651 >seq489 Length=1032923 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 50647 GAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACATG 50706 || || |||||| | || ||| | || ||||| ||| || | || |||||||| || ||| Sbjct 355178 GAGAAGGAGTTTGTGACAGACTCATTGCCCGTTGCACTGATTGGAATGAACGCGGATATG 355237 Query 50707 ATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGACAACCGAAA 50766 ||| | || ||||| | ||||||| ||||| || || |||||| | |||| Sbjct 355238 ATGAGGGAATACATCTCTTACTGTGCAGACCGATTGCTGCTGTCGCTGGGTTATGGGAAA 355297 Query 50767 TACTATAATGCACGTAACCCCTTTCCGTTTATG-AATAACATATCGTTGGAGGGCAAAAC 50825 || |||||| | || ||| | ||| ||| | || || | ||||| || || Sbjct 355298 GTATACAATGCAACACAGCCATTTGACTGGATGGAATTA-ATTTCCATTGAGGGGAAGAC 355356 Query 50826 AAACTTTTTCGAAAGACGTGTAGGCGAATACAAAA 50860 ||||||||||| |||||||| || |||||| ||| Sbjct 355357 CAACTTTTTCGAGAGACGTGTGGGTGAATACCAAA 355391 >seq28 Length=612614 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 50647 GAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACATG 50706 || || |||||| | |||||| | || ||||| ||| || | || |||||||| || ||| Sbjct 279121 GAGAAGGAGTTTGTGACGGACTCATTGCCCGTTGCACTGATTGGAATGAACGCGGATATG 279062 Query 50707 ATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGACAACCGAAA 50766 ||| | || ||||| | |||||| ||||| || || |||||| | |||| Sbjct 279061 ATGAGGGAATACATCTCTTACTGTGCAGATCGATTGCTGCTGTCGCTGGGTTATGGGAAA 279002 Query 50767 TACTATAATGCACGTAACCCCTTTCCGTTTATG-AATAACATATCGTTGGAGGGCAAAAC 50825 || |||||| | || ||| | ||| ||| | || || | ||||| || || Sbjct 279001 GTATACAATGCAACACAGCCATTTGACTGGATGGAATTA-ATTTCCATTGAGGGGAAGAC 278943 Query 50826 AAACTTTTTCGAAAGACGTGTAGGCGAATACAAAA 50860 ||||||||||| |||||||| || |||||| ||| Sbjct 278942 CAACTTTTTCGAGAGACGTGTGGGTGAATACCAAA 278908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507007282785360