Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq932 131 2e-25 seq864 111 2e-19 >seq932 Length=795108 Score = 131 bits (144), Expect = 2e-25 Identities = 357/540 (66%), Gaps = 5/540 (1%) Strand=Plus/Plus Query 96820 CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACGATACGTTACACAG 96878 ||| ||| | || || |||||||| ||||||||| || | || | || ||| ||| Sbjct 206079 CCAATGGAATTGTCCCTATGCTCAGGGTGTACAATGACACCGCCAGG-TATGTTGATCAG 206137 Query 96879 GGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTT 96938 |||||| || || ||||| | || |||||||||| || ||||| || ||| || Sbjct 206138 GGCGGCGGGAAGCGTAAGGGCGCCTTTGCAATCTACTTGGAGCCCTGGCATGCAGACATT 206197 Query 96939 TTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTG 96998 | || || | || |||| || || |||| || ||| || || ||||| | Sbjct 206198 CTCGATTTCCTAGACTTGCGGAAGAATCATGGCAAGGA-GAGCAGCGTGCAAGGGATCTC 206256 Query 96999 TTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGG 97058 || |||| ||||||| | ||||||||||| ||||| | ||| | || || | ||| Sbjct 206257 TTCTATGGACTCTGGATTCCAGATTTGTTTATGAAAAGGGTCGAGGAAAATGCTTCATGG 206316 Query 97059 AGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAG 97118 ||| | || || | | ||||||||||| | ||| | || || || |||||| Sbjct 206317 TCCCTCTTCTGTCCGAATGAGGCACCCGGTCTGGCTGATGTTTATGGTGACGAATTTGAG 206376 Query 97119 GCCAAGTACACGGCCTACGAGCAAGAGGGCCGA-TACGTGAGACGAGTCGATGCACGAGA 97177 | |||| | |||||| || | || ||| | | | | || | ||||| ||| | Sbjct 206377 GAGCTCTACATGAAATACGAGAAACAAGGGCGAGCAAGGGCAAAGA-TTGATGCGCGAAA 206435 Query 97178 ACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAA 97237 | ||| | || || || ||| ||| | ||||| ||||| || ||||| ||||| || Sbjct 206436 GGTTTGGTACGCTATTTTGGAGGCGCAGATTGAGACCGGAACCCCATACATGCTCTATAA 206495 Query 97238 GGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCT 97297 |||| || || | || |||||||| | || | || ||||| |||| ||| | Sbjct 206496 GGATTCCTGTAACAGGAAGAGCAACCAGCAGAACCTCGGTACCATTCGTTGCTCAAATTT 206555 Query 97298 GTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATC 97357 ||| || || ||| | || ||| |||| || || ||| || || ||| | |||| || Sbjct 206556 GTGTACTGAGATTATTGAATACACCTCACCCGATGAGGTTGCCGTGTGCAATTTGGCCTC 206615 >seq864 Length=1598700 Score = 111 bits (122), Expect = 2e-19 Identities = 335/517 (65%), Gaps = 4/517 (1%) Strand=Plus/Minus Query 96820 CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACGATACGTTACACAG 96878 ||| ||| | || || ||||| || ||||||||| || | || | || ||| ||| Sbjct 469671 CCAATGGAATTGTCCCNATGCTNAGGGTGTACAATGACACCGCCAGG-TATGTTGATCAG 469613 Query 96879 GGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTT 96938 |||||| || || ||||| | || |||||||||| || ||||| || ||| || Sbjct 469612 GGCGGCGGGAAGCGTAAGGGCGCCTTTGCAATCTACTTGGAGCCCTGGCATGCAGACATT 469553 Query 96939 TTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTG 96998 | || || | || || | || || |||| |||||| || || ||||| | Sbjct 469552 CTCGATTTNCTAGACTTGNGGAAGAATCATGGCAAGGAAGAGCAGCGTGCAAGGGATCTC 469493 Query 96999 TTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGG 97058 || |||| |||||| | || |||||||| ||||| | || | || || | ||| Sbjct 469492 TTCTATGGNCTCTGGATTCCNGATTTGTTTATGAAAAGGGTNGAGGAAAATGNTTCATGG 469433 Query 97059 AGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAG 97118 ||| | || || | | ||||||||||| | ||| | || | || |||||| Sbjct 469432 TCCCTCTTCTGTCCGAATGAGGCACCCGGTCTGGCTGATGTTTATGGTGNCGAATTTGAG 469373 Query 97119 GCCAAGTACACGGCCTACGAGCAAGAGGGCCGA-TACGTGAGACGAGTCGATGCACGAGA 97177 | |||| | |||||| || | || ||| | | | | || | || || || | Sbjct 469372 GAGCTNTACATGAAATACGAGAAACAAGGGCGAGCAAGGGCNAAGA-TTGANGCGCGNAA 469314 Query 97178 ACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAA 97237 | ||| | || || || ||| ||| | ||||| ||||| || ||||| || || || Sbjct 469313 GGTTTGGTACGCTATTTTGGAGGCGCAGATTGAGACCGGAACCCCATACATGCTNTATAA 469254 Query 97238 GGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCT 97297 |||| || || | || |||||||| | || | || ||||| |||| ||| | Sbjct 469253 GGATTCCTGTAACAGGAAGAGCAACCAGCAGAACCTCGGTACCATTCGTTGCTCNAATTT 469194 Query 97298 GTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||| || || ||| | || ||| |||| || || ||| Sbjct 469193 GTGTACTGAGATTATTGAATACACCTCACCCGATGAG 469157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741048797381480