Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_004681.1 Length=75931 Score E Sequences producing significant alignments: (Bits) Value seq160 192 3e-44 seq363 118 5e-22 >seq160 Length=568654 Score = 192 bits (212), Expect = 3e-44 Identities = 464/696 (67%), Gaps = 15/696 (2%) Strand=Plus/Minus Query 66686 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 66745 ||| ||||||| ||||||| ||| |||| ||| || || |||| ||| ||| |||| Sbjct 244256 ATTTCCACCGGGTCTATCGGTCTAGACGTCGCCCTTGGAGTCGGAGGGATCCCTCGGGGA 244197 Query 66746 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66805 || || || || ||||| ||||||||||| || || | || ||| ||||||||| Sbjct 244196 CGTGTCGTCGAGATCTATGGCCCAGAATCCAGCGGTAAAACCACCCTGACGCTCCACGCG 244137 Query 66806 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 66865 || || | ||||| ||| ||| || | |||||| | | |||||||||| ||| | || Sbjct 244136 GTAGCTGAGGCGCAAAAGAGCGGCGGGATCGCCGCATTCGTCGACGCTGAACACGCTCTC 244077 Query 66866 GACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCG 66925 || | |||||| | |||||| || | ||| | ||| || | |||||| Sbjct 244076 GATGTGGCCTACGCCCGGAAGCTCGGGGTTCGCACCGATGATCTCTTGATCTCGCAGCCG 244017 Query 66926 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 66985 || || || ||||| || || || |||| || | | || || || | | Sbjct 244016 GATACCGGGGAGCAAGCGCTTGAAATCGCAGAGATGTTGGTGCGTTCCAACGCGATCGAT 243957 Query 66986 ATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATC 67045 || | || ||||| || ||||| || || |||||| | || ||| ||||||| || || Sbjct 243956 ATTCTTGTGGTTGATTCGGTGGCTGCGCTTGTGCCGAGAGCTGAGATCGAAGGGGAAATG 243897 Query 67046 GGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACT 67105 || ||| ||||||||| |||| || || | ||| || || | || || | || Sbjct 243896 GGCGACTCCCACGTCGGCTTGCAGGCTCGATTGATGAGCCAAGCGCTCCGAAAATTAACG 243837 Query 67106 GGCACCATCTCCAGCACCAACACGCTG-ACGCTCTGGGTCAACCAGTTGCGCGAGAAGAT 67164 || | || | | | | || ||| | ||| |||||||| | || |||||| Sbjct 243836 GGTATTATTGCGAAGAGCCGGAC-CTGTGTGGTCTTTATCAACCAGATCCGATTGAAGAT 243778 Query 67165 CGGCAACGTGGGCTACGG----CCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGT 67220 ||| |||| | ||| |||||| || || ||||| || || || | | || Sbjct 243777 CGG---CGTGATGTTCGGCAGCCCCGAA----ACGACTACGGGTGGCAACGCACTTAAGT 243725 Query 67221 TCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGA-GAAGGAAGGCGATGAG 67279 | || ||| | || ||||| | ||||| |||| | ||| ||||| ||||| || Sbjct 243724 TTTATAGCTCGATTCGTATGGACATTCGTCGTATCG-GAGCGATCAAGGACAGCGATAAG 243666 Query 67280 GCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGC 67339 | || || || || |||||||| || || |||||||||||| ||||||||||| |||| Sbjct 243665 GTCGTGGGTAATCGAACCCGGGTTAAGGTGGTCAAGAACAAGTTGGCCCCGCCGTTCCGC 243606 Query 67340 AACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 67375 | |||||| || ||||||| || |||||| Sbjct 243605 GAGCATGAGTTCGATATCATGTACGGCGAAGGCATC 243570 Score = 93.3 bits (102), Expect = 2e-14 Identities = 140/192 (73%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 66920 CAGCCGGA-CACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA 66978 |||||||| ||| ||||||||||| ||||| || || || |||| ||| || || || Sbjct 395860 CAGCCGGATCAC-GGCGAGCAGGCTCTGGAAATTGTCGAGATCCTGGTCCGATCGGG-GA 395803 Query 66979 GCTGTCCATCGTCGTCGTT---GACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGA 67035 | || || ||| ||||| || || ||||| ||| ||||||| || ||||||||||| Sbjct 395802 -CAATCGAT-GTCCTCGTTCTGGATTCAGTGGCTGCCTTGGTGCCCCGTGCCGAGCTCGA 395745 Query 67036 AGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCG 67095 ||| || || || || ||| | || |||| || || || ||| || |||||||| Sbjct 395744 AGGAGAAATGGGCGAGGCTCATATGGGTTTGCAAGCCCGTCTTATGAGCCAAGCCATGCG 395685 Query 67096 CAAGCTCACTGG 67107 || ||||| || Sbjct 395684 AAAACTCACCGG 395673 >seq363 Length=24173 Score = 118 bits (130), Expect = 5e-22 Identities = 381/582 (65%), Gaps = 16/582 (3%) Strand=Plus/Minus Query 66755 GAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAAT 66814 ||||| || ||||| ||||| || || || || | || | || ||| | | || | Sbjct 21840 GAAATATATGGCCCGGAATCATCCGGTAAACCA-CGCTC-GCCTGCACACCATTGCGGAA 21783 Query 66815 GCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCCGAG 66874 ||||| || | ||||| | | ||||| | || || || || | || || || | Sbjct 21782 GCGCAAAAAACGGGTGGGATCTGCGCCTTTGTGGATGCGGAACATGCGCTTGATCCGGTC 21723 Query 66875 TACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGC 66934 |||||| |||||||| || || || | ||| || | |||||||| || || Sbjct 21722 TACGCCCGCAAACTCGGTGTTGATCTGGATGAACTCCTGATTTCACAGCCGGATACAGGT 21663 Query 66935 GAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTC 66994 |||||||| || |||||| ||| || || ||||| | | || || | || Sbjct 21662 GAGCAGGCGCTTGAGATCACCGACACGCTGGTGCGCTCTGGAGCGGTGGATATTCTGGTG 21603 Query 66995 GTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGT 67054 || || || ||||| || || |||||||| ||| | ||||| || || || ||| | Sbjct 21602 GTCGATTCGGTGGCAGCGCTCACACCGCGCGCAGAGATTGAAGGGGAGATGGGTGAC--T 21545 Query 67055 CACGTC--GGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGGCACCA 67112 ||| || || || || ||||| || ||| ||||| || || | || | ||| Sbjct 21544 CACTTCCCGGTCTTCAGGCGCGGCTGATGAGCCAGGCGTTGA--AAATTGACCGCGTCCA 21487 Query 67113 TCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCA--A 67170 ||||| || || ||| || | | | |||||||| | ||| ||| ||||| | Sbjct 21486 TCTCCCGCTCCCGCACCATGGTGATTTTCATCAACCAGATCCGCATGAAAATCGGTGTGA 21427 Query 67171 CGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTC 67230 || | | ||||| ||||| || || || || || || | | ||||| |||| Sbjct 21426 TGTTTGGAA--GCCCG---GAGACAACAACCGGTGGCAATGCGCTCAAATTCTATTCCTC 21372 Query 67231 AGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAA 67290 |||||| | ||| |||| ||||| | | || ||| | | || |||| |||||| Sbjct 21371 CGTCCGCCTTGATATCCGCCGCATTGGCGCCATCAAG-AGCGTGACGAGGTGACCGGCAA 21313 Query 67291 CCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCC 67332 || ||||| || ||||||||||| |||||| |||| ||||| Sbjct 21312 CCAGACCCGCGTTAAAGTCGTCAAAAACAAGGTGGCGCCGCC 21271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242851076158076