Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq492 93.3 3e-14 seq99 89.7 4e-13 seq557 86.0 5e-12 >seq492 Length=1085467 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || |||||||||||||| | | | | || || | || Sbjct 146938 TGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAAGGTACGACCATCCTCAAGCTGC 146997 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||||||| | |||| ||| || |||||| ||||| || || ||||| || ||| Sbjct 146998 TTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTTG 147057 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||| ||| |||| ||||| || || || || | ||||| || ||||| || Sbjct 147058 GTCTTCACATTTTCAATGGTGTCCGACGACTCCACCTCAAGCGTAATCGTCTTACCCGTA 147117 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 || || || |||||||| |||||| Sbjct 147118 AGCGTCTTCACAAAAATCTGCATA 147141 >seq99 Length=379092 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| ||||| || || ||| | |||||||||||| || ||| |||| || Sbjct 173876 ACCAAATGGAGGGTTGACTCCTTTGG-ATGTTGTAATCGACAAG-GTTCGGTCGTCCTCC 173933 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || || || | |||| ||| |||||||| | ||||| || || ||||| Sbjct 173934 AATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGAATGCCCTCCTTGTCTTGG 173993 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| || | ||| | || | || |||||| || | ||| ||||| || Sbjct 173994 ATCTTTGACTTGACATTTGCAATGTTGTC-CGATGATTCTACCTCAAGGGTGATGGTCTT 174052 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || ||||| ||||| Sbjct 174053 CCCGGTTAGAGTCTTGACGAAAATCTGCAT 174082 >seq557 Length=252103 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| ||||| || |||||||| || || | | | | |||| || | || Sbjct 155853 TGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCAAGCTGC 155794 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | |||| ||| || || ||| ||||| || || ||||| || || Sbjct 155793 TTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTA 155734 Query 15281 CTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 |||| ||| | || || ||||| | || || || || | ||||| || || || || Sbjct 155733 GTCTTCACATTCTCAATCGTATC-CGATGACTCAACTTCAAGCGTAATAGTCTTTCCAGT 155675 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 155674 CAACGTCTTCACAAAAATCTGCAT 155651 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || || || || |||||||||||||| | | | | | || || | || Sbjct 156536 ATGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAAAGTACGACCATCCTCAAGCTG 156477 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | |||| ||| || |||||| ||||| || || ||||| || || Sbjct 156476 CTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTT 156417 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTTTACCTG 15338 | |||| ||| |||| || || || | || || || || | ||||| || || || | Sbjct 156416 GGTCTTCACATTTTCAATCGTGTC-CGATGACTCAACTTCAAGCGTAATAGTCTT-CCAG 156359 Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || || || ||||| |||||| Sbjct 156358 TCAACGTCTTAACGAAAATCTGCATA 156333 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| ||||| || |||||||| || || | | | | |||| || | || Sbjct 155625 TGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCAAGCTGC 155566 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | |||| ||| || || ||| ||||| || || ||||| || || Sbjct 155565 TTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTA 155506 Query 15281 CTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 |||| ||| | || || ||||| | || || || || | ||||| || || || || Sbjct 155505 GTCTTCACATTCTCAATCGTATC-CGATGACTCAACTTCAAGAGTAATAGTCTTTCCAGT 155447 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || || ||||| |||||| Sbjct 155446 CAATGTCTTCACGAAAATCTGCATA 155422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362174243011743