Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq492 131 4e-25 seq557 116 9e-21 >seq492 Length=1085467 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| |||||||| ||||||||||| || |||||| | || | ||| || Sbjct 147385 AGCACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAAGGTACGACCATCC 147444 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| ||||| || | ||| || || ||||| ||||| || || ||| Sbjct 147445 TCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCC 147504 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| | || || || || | |||||| | || || || || || ||||| Sbjct 147505 TGAATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTTATAGTT 147564 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | ||| || ||||| |||||||| Sbjct 147565 TTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147596 Score = 129 bits (142), Expect = 1e-24 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| |||||||| ||||||||||| || |||||| | ||| | ||||| || Sbjct 147844 ACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGTCCGTCCTCA 147903 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || ||||| ||||| || | ||| ||||| ||||| || || || || |||||| Sbjct 147904 AGCTGCTTCCCAGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGA 147963 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTT 104529 ||||| | || ||||| || | || || | ||| || || || || ||||| ||||| Sbjct 147964 ATCTTCGTCTTAACATTCTCGATTGTGTC-CGAGGACTCAACTTCAAGCGTAATCGTCTT 148022 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| |||||||| Sbjct 148023 TCCTGTCAAAGTCTTCACAAAAATCTGCAT 148052 >seq557 Length=252103 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || |||||| | ||| | |||||| || || || || || Sbjct 155619 GTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCAAGCTGCTTGCCG 155560 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| ||||| ||||| || || || || ||||| ||||| | || Sbjct 155559 GCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTAGTCTTC 155500 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| | || || || || ||||||||||| ||||| | ||| Sbjct 155499 ACATTCTCAATCGTATCCGATGACTCAACTTCAAGAGTAATAGTCTTTCCAGTCAATGTC 155440 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 155439 TTCACGAAAATCTGCAT 155423 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || |||||| | ||| | |||||| || || || || || Sbjct 155847 GTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCAAGCTGCTTGCCG 155788 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| ||||| ||||| || || || || ||||| ||||| | || Sbjct 155787 GCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTAGTCTTC 155728 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| | || || || || ||||||||||| ||||| | || Sbjct 155727 ACATTCTCAATCGTATCCGATGACTCAACTTCAAGCGTAATAGTCTTTCCAGTCAACGTC 155668 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 155667 TTCACAAAAATCTGCAT 155651 Score = 116 bits (128), Expect = 9e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||||||| || ||||| |||||||| ||||| |||||| | |||| || || || Sbjct 156316 TACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGGTTCGGCCATCCTC 156257 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || || || ||||| ||||| | | ||| || || ||||| || || || |||||||| Sbjct 156256 AAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTG 156197 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTG-TAATAGTCT 104528 ||||| | || |||||||| || |||| | || || || || | ||||||||| Sbjct 156196 GATCTTGGTCTTCACATTTTCATCG-TATCCGATGACTCAACTTCAAGCGGTAATAGTCT 156138 Query 104529 TACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||||| | || || || || |||||||| Sbjct 156137 TTCCAGTCAACGTCTTAACGAAAATCTGCAT 156107 Score = 104 bits (114), Expect = 5e-17 Identities = 144/198 (73%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || |||||| | ||| | |||||| || || || || || Sbjct 155164 GTGGACTCCTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCAAGCTGCTTGCCG 155105 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || | || ||||| || ||||||||||| | || Sbjct 155104 GCGAAGATCAGGCGCTGCTGATCCGGGG--ATGCCTTCCTTGTCCTGAATCTTCGTCTTC 155047 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || | ||| || ||||| || ||||||||||| || || | || Sbjct 155046 ACATTCTCAATAGTGTC-CGAGGACTCCACCTCAAGGGTAATAGTCTTTCCGGTCAAAGT 154988 Query 104542 TTTTACAAATATCTGCAT 104559 ||| || || |||||||| Sbjct 154987 TTTCACGAAAATCTGCAT 154970 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||||| || ||||| || || || || | ||| | ||| || Sbjct 156544 AGCACAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAAAGTACGACCATCC 156485 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| ||||| || | ||| || || || || || || || || ||| Sbjct 156484 TCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCC 156425 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| | || |||||||| | || || | || || || || ||||||||| Sbjct 156424 TGGATCTTGGTCTTCACATTTTCAATCGTGTCCGATGACTCAACTTCAAGCGTAATAGTC 156365 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | || || || || |||||||| Sbjct 156364 TT-CCAGTCAACGTCTTAACGAAAATCTGCAT 156334 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/199 (71%), Gaps = 5/199 (3%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCT-ACCGTCTTCTAGTTGTTTTCC 104421 || || || |||||||| || ||||| | || | |||||| || || || || || Sbjct 155391 GTGGACTCCTTCTGAATGTTGTAGTCGCTCAAGGTACGGACCGTCCTCAAGCTGCTTCCC 155332 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||| || || || | ||| ||||| ||||| || || || || ||||||||||| | || Sbjct 155331 AGCGAAGATGAGACGCTGCTGATCCGGAGG-ATACCCTCCTTGTCCTGAATCTTCGTCTT 155273 Query 104482 TACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 ||||| || | || ||| ||| || ||||| || ||||| ||||| || || | | Sbjct 155272 AACATTCTCGATAGTGTCG--AGGACTCAACCTCAAGGGTAATCGTCTTTCCGGTCAAAG 155215 Query 104541 TTTTTACAAATATCTGCAT 104559 | || || || |||||||| Sbjct 155214 TCTTCACGAAAATCTGCAT 155196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151381833176084