Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq557 111 1e-19 seq492 109 5e-19 seq475 98.7 8e-16 seq99 95.1 1e-14 >seq557 Length=252103 Score = 111 bits (122), Expect = 1e-19 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| ||||||||||| ||| ||| || ||||||| |||||| Sbjct 155170 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCAAGCTGC 155111 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| | || | | |||||||||| ||| ||| Sbjct 155110 TTGCCGGCGAAGATCAGGCGCTGCTGATC--CGGGGATGCCTTCCTTGTCCTGAATCTTC 155053 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | | || || || | |||||| ||| | || || || || ||||| Sbjct 155052 GTCTTCACATTCTCAATAGTGTCCGAGGACTCCACCTCAAGGGTAATAGTCTTTCCGGTC 154993 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 | ||||||||| ||||||||||| Sbjct 154992 AAAGTTTTCACGAAAATCTGCAT 154970 Score = 104 bits (114), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| ||||||||||| ||| ||| || ||||||| Sbjct 154950 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAGGTGCGTCCGTCCTCA 154891 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || || | || | ||||||||| || || | | |||||||||| Sbjct 154890 AGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTC--GGGGGATGCCTTCCTTGTCCTGG 154833 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||||| | | || || || | ||||| ||||| ||| || ||||| Sbjct 154832 ATTTTGGTCTTGACGTTCTCAATCGTGTCTGAGGACTCGACCTCGAGTGTGATTGTTTTG 154773 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || |||||||| |||||||| Sbjct 154772 CCCGTGAGGGTCTTCACAAAGATCTGCAT 154744 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||| || ||||||||||| ||| ||| || ||||||| |||||| Sbjct 155853 TGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCAAGCTGC 155794 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || |||| | |||||||||||| || | || ||||||||| || || Sbjct 155793 TTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTA 155734 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | | || ||||| | ||||| || | || || || || || || Sbjct 155733 GTCTTCACATTCTCAATCGTATCCGATGACTCAACTTCAAGCGTAATAGTCTTTCCAGTC 155674 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 | || ||||||||||||||||| Sbjct 155673 AACGTCTTCACAAAAATCTGCAT 155651 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/204 (71%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC-GTCCTCCAGCTG 48582 ||||| ||| |||||| ||||||||||| || ||| || | |||||| ||||| Sbjct 155397 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGCTCAAGGTACGGACCGTCCTCAAGCTG 155338 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||||||| || | || ||||||||| ||| || Sbjct 155337 CTTCCCAGCGAAGATGAGACGCTGCTGATCCGGAGG-ATACCCTCCTTGTCCTGAATCTT 155279 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | | || || || | ||||| ||| | || || || || ||||| Sbjct 155278 CGTCTTAACATTCTCGATAGTGTC-GAGGACTCAACCTCAAGGGTAATCGTCTTTCCGGT 155220 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | ||| ||||| ||||||||||| Sbjct 155219 CAAAGTCTTCACGAAAATCTGCAT 155196 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||| || ||||||||||| ||| ||| || ||||||| |||||| Sbjct 155625 TGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCAAGCTGC 155566 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || |||| | |||||||||||| || | || ||||||||| || || Sbjct 155565 TTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTA 155506 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | | || ||||| | ||||| || | || || || || || || Sbjct 155505 GTCTTCACATTCTCAATCGTATCCGATGACTCAACTTCAAGAGTAATAGTCTTTCCAGTC 155446 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| ||||||||||| Sbjct 155445 AATGTCTTCACGAAAATCTGCAT 155423 >seq492 Length=1085467 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| ||||||||||| ||| ||| || ||||||| |||||| Sbjct 148078 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCAAGCTGC 148137 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | ||||||||| ||| || | | |||||||||| ||||| Sbjct 148138 TTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATTTTG 148197 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || || | ||||| ||||| ||| || ||||| || ||| Sbjct 148198 GTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTTGCCCGTG 148257 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||| |||||||| Sbjct 148258 AGGGTCTTCACAAAGATCTGCAT 148280 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| ||||||||||| ||| ||| || ||||||| |||||| Sbjct 148306 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCAAGCTGC 148365 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | ||||||||| ||| || | | |||||||||| ||||| Sbjct 148366 TTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATTTTG 148425 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || || | ||||| ||||| ||| || ||||| || ||| Sbjct 148426 GTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTTGCCCGTG 148485 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||| |||||||| Sbjct 148486 AGGGTCTTCACAAAGATCTGCAT 148508 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| ||||||||||| ||| ||| || ||||||| |||||| Sbjct 148534 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCAAGCTGC 148593 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | ||||||||| ||| || | | |||||||||| ||||| Sbjct 148594 TTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATTTTG 148653 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || || | ||||| ||||| ||| || ||||| || ||| Sbjct 148654 GTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTTGCCCGTG 148713 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||| |||||||| Sbjct 148714 AGGGTCTTCACAAAGATCTGCAT 148736 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| | ||||| || |||||| || ||||||||||| Sbjct 146913 ACCGCCGCGCAGACGGAGCACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCT 146972 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | ||||| |||||||| || || |||| | ||||||||| || ||| Sbjct 146973 CAAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGG 147032 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| || || ||| | | | ||||| || | |||||| Sbjct 147033 AATACCCTCCTTGTCCTGGATCTTGGTCTTCACATTTTCAATGGTGTCCGACGACTCCAC 147092 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || ||||| || || || ||||||||||||||||| Sbjct 147093 CTCAAGCGTAATCGTCTTACCCGTAAGCGTCTTCACAAAAATCTGCAT 147140 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| | ||| | ||| ||| || ||||||||||| ||| ||| || ||||| Sbjct 147841 AACACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGTCCGTCC 147900 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| || || |||| | |||||||||||| || | || ||||||||| Sbjct 147901 TCAAGCTGCTTCCCAGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCC 147960 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| ||| ||| | | | | || || || | ||||| || | || || || Sbjct 147961 TGAATCTTCGTCTTAACATTCTCGATTGTGTCCGAGGACTCAACTTCAAGCGTAATCGTC 148020 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || | ||| ||||||||||||||||| Sbjct 148021 TTTCCTGTCAAAGTCTTCACAAAAATCTGCAT 148052 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || ||||| ||| || || |||||||| || ||| || | ||||| Sbjct 147159 CACCAAGTGCAGTGTAGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTACGACCATCCTC 147218 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || |||| | ||||||||| || || | | ||||||||| Sbjct 147219 AAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTG 147278 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||||||| ||| | | | |||| ||||| | ||||| || | || || ||||| Sbjct 147279 AATTTTCGTCTTCACATTCTCTATCGTATCCGATGACTCAACTTCAAGCGTAATCGTTTT 147338 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | || ||||||||||||||||| Sbjct 147339 TCCAGTCAATGTCTTCACAAAAATCTGCAT 147368 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| | ||| ||| || ||||||||||| ||| ||| || | ||||| Sbjct 147387 CACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAAGGTACGACCATCCTC 147446 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || |||| | ||||||||| || || | | ||||||||| Sbjct 147447 AAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTG 147506 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | | | |||||||| | ||||| || | ||||| ||||| Sbjct 147507 AATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTTATAGTTTT 147566 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | || ||||||||||||||||| Sbjct 147567 TCCAGTCAATGTCTTCACAAAAATCTGCAT 147596 >seq475 Length=1546706 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||||| | | ||| ||||| || || ||||||||| ||||| ||||| | | Sbjct 934394 CCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTTTGGATGTTATAATCCGAC 934453 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || ||| |||||||||| ||||| ||| | |||| | |||||| || ||| || Sbjct 934454 AAGGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGA 934513 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||| || || ||||| | || | | | || | || || | Sbjct 934514 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACATTTGCAACGTTGTCCGACGATTCTACC 934573 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 || | || ||||| || ||||| ||||| || || ||||||||||| ||| || Sbjct 934574 TCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCATGGTGCCT 934627 >seq99 Length=379092 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||||| | | ||| ||||| || || ||||||| || |||||||||| | | Sbjct 173858 CCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTTGGA-TGTTGTAATC-GAC 173915 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || ||| |||||||||| ||||| ||| | |||| | |||||| || ||| || Sbjct 173916 AAGGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGA 173975 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||| || || ||||| | || ||| | || | || || | Sbjct 173976 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACATTTGCAATGTTGTCCGATGATTCTACC 174035 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 || | || ||||| || ||||| ||||| || || ||||||||||| ||| || Sbjct 174036 TCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCATGGTGCCT 174089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421245434519123