Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq492 111 1e-19 seq557 87.8 2e-12 >seq492 Length=1085467 Score = 111 bits (122), Expect = 1e-19 Identities = 157/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGG 94850 |||||||||| ||||| ||||| || || || | ||| || || |||| ||| || | Sbjct 147838 CGCAACACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGTCCG 147897 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||| ||||| || || | || || | | |||||||| ||||||||||| || | Sbjct 147898 --TCCTCAAGCTGCTTCCCAGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCT 147955 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||| || | ||| || ||| ||||| | | || || |||| ||| | Sbjct 147956 TGTCCTGAATCTTCGTCTTAACATTCTCGATTGTGTCCGAGGACTCAACTTCAAGCGTAA 148015 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || ||||| || | ||| |||||||| |||||||||| Sbjct 148016 TCGTCTTTCCTGTCAAAGTCTTCACAAAAATCTGCATGC 148054 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||||||||| ||||| || || || | ||| || ||||||| || || || |||| Sbjct 147159 CACCAAGTGCAGTGTAGACTCTTTCTGGATGTTGTAGTCGCTCA-AG-GTACGACCATCC 147216 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || ||||| || || | || || | | ||||| || |||||||| || || ||||| Sbjct 147217 TCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCC 147276 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | |||||| | ||| || | | || || | || || |||| ||| || ||| Sbjct 147277 TGAATTTTCGTCTTCACATTCTCTATCGTATCCGATGACTCAACTTCAAGCGTAATCGTT 147336 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| | || |||||||| |||||||| Sbjct 147337 TTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147368 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | || || ||||| || | ||| || || |||| ||| ||||| Sbjct 148072 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCA 148131 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || | ||||| | | ||||| || || || || ||||| ||||| | Sbjct 148132 AGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGG 148191 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| | ||||||| | | ||||| | | ||||| || | ||||| ||||| Sbjct 148192 ATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTTG 148251 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||||||||||||||||| Sbjct 148252 CCCGTGAGGGTCTTCACAAAGATCTGCATGC 148282 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | || || ||||| || | ||| || || |||| ||| ||||| Sbjct 148300 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCA 148359 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || | ||||| | | ||||| || || || || ||||| ||||| | Sbjct 148360 AGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGG 148419 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| | ||||||| | | ||||| | | ||||| || | ||||| ||||| Sbjct 148420 ATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTTG 148479 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || ||||||||||||||||||| Sbjct 148480 CCCGTGAGGGTCTTCACAAAGATCTGCATGC 148510 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | || || ||||| || | ||| || || |||| ||| ||||| Sbjct 148528 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCA 148587 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || | ||||| | | ||||| || || || || ||||| ||||| | Sbjct 148588 AGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGG 148647 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| | ||||||| | | ||||| | | ||||| || | ||||| ||||| Sbjct 148648 ATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTTG 148707 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || |||||||||||||||||| Sbjct 148708 CCCGTGAGGGTCTTCACAAAGATCTGCATG 148737 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 |||| ||||| ||||| ||||| || || || | ||| || || |||| || || || Sbjct 147382 CGCAGCACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCA-AG-GTACGAC 147439 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 |||||| ||||| || || | || || | | ||||| || |||||||| || || | Sbjct 147440 CATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCT 147499 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | ||| || | ||| ||| | | || || | || || |||| ||| | Sbjct 147500 TGTCCTGAATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTTA 147559 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||||||||| | || |||||||| |||||||| Sbjct 147560 TAGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147596 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGG 94850 |||| ||||| ||||| ||||| || || || | ||| || || |||| || || | Sbjct 147610 CGCAGCACCAGATGCAATGTAGACTCTTTCTGGATGTTGTAGTCACTCAAGGTACGTCCG 147669 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||| ||||| || || | ||||| | | ||||| || |||||||| || || | Sbjct 147670 --TCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCCTCCT 147727 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || | ||| ||| | | || || | || || |||| ||| | Sbjct 147728 TGTCCTGGATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTAA 147787 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||||||||| | || |||||||| |||||||| Sbjct 147788 TCGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147824 >seq557 Length=252103 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || ||||| || | ||| || || |||| ||| ||||| Sbjct 154950 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAGGTGCGTCCGTCCTCA 154891 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || | ||||| | | ||||| || || | || ||||| ||||| | Sbjct 154890 AGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCGGGGG--ATGCCTTCCTTGTCCTGG 154833 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| | ||||||| | | ||||| | | ||||| || | ||||| ||||| Sbjct 154832 ATTTTGGTCTTGACGTTCTCAATCGTGTCTGAGGACTCGACCTCGAGTGTGATTGTTTTG 154773 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || |||||||||||||||||| Sbjct 154772 CCCGTGAGGGTCTTCACAAAGATCTGCATG 154743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448284907112280