Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq112 176 7e-40 seq472 154 2e-33 seq461 154 2e-33 seq591 152 8e-33 >seq112 Length=1543195 Score = 176 bits (194), Expect = 7e-40 Identities = 199/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| |||||| |||||||| || ||||| |||||||| || ||| Sbjct 830312 GCCAAGCGCCATCGCAAGGTTCTTCGGGATAACATTCAGGGAATTACCAAGCCCGCGATC 830371 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||||||||||| || || |||||| |||| || ||| |||||||||| | | Sbjct 830372 CGTCGGTTGGCTCGTCGTGGAGGTGTGAAGCGTATCTCCGGGTTGATCTATGAAGAAACT 830431 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || |||| | ||| | |||||| || | ||||| | || | || ||| |||||| Sbjct 830432 CGCAATGTGCTCAAGGTGTTCCTCGAGTCGATTATCAAGGACTCGGTCACCTACACCGAG 830491 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || ||||| || || |||||||| | ||||| | ||||| || || ||| Sbjct 830492 CATGCCCGCCGCAAGACGGTGACTGCCATGGATGTTGTCTACTCGTTGAAGCGCCAGGGC 830551 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||||||||| || ||| Sbjct 830552 CGCACTTTGTATGGTTTTGGTAGCTAA 830578 >seq472 Length=1060804 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||||| | | || |||||||| || || ||||||||||| ||||| Sbjct 221134 GCTAAGCGTCATCGCAAGGTTTTGCGTGATAACATTCAGGGTATCACCAAGCCCGCTATT 221075 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || |||||||| || ||||||||| |||| || | ||||||| || | Sbjct 221074 CGTCGTCTAGCCCGTCGTGGAGGTGTCAAGCGTATCTCCGGTCTCATCTATGAGGAAACC 221015 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || ||||| | ||| |||||||| || | | ||| | || | | |||||||||| Sbjct 221014 CGCAATGTTCTCAAGGTCTTCCTCGAGTCGATCATCAAGGACTCGGTTACCTATACCGAG 220955 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || |||||||| ||| |||||||| | || ||| | | || || || || Sbjct 220954 CATGCCCGTCGCAAGACTGTGACCGCCATGGATGTGGTTTATTCTCTCAAGCGCCAGGGT 220895 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| ||||| Sbjct 220894 CGCACTCTCTATGGGTTTGG 220875 >seq461 Length=888517 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||||||| | | || |||||||| || || ||||| ||||| ||||| Sbjct 623831 GCTAAGCGTCATCGCAAGGTTTTGCGTGATAACATTCAGGGTATCACTAAGCCCGCTATT 623772 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||||||||| || ||||||||| |||| || | ||||||| || | Sbjct 623771 CGTCGTCTAGCTCGTCGTGGAGGTGTCAAGCGTATCTCCGGTCTCATCTATGAGGAAACC 623712 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || ||||| | ||| |||||||| || | | ||| | || | | |||||||||| Sbjct 623711 CGCAATGTTCTCAAGGTCTTCCTCGAGTCGATCATCAAGGACTCGGTTACCTATACCGAG 623652 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || |||||||| ||| |||||||| | || ||| | | || || || || Sbjct 623651 CATGCCCGTCGCAAGACTGTGACCGCCATGGATGTGGTTTATTCTCTCAAGCGCCAGGGT 623592 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| ||||| Sbjct 623591 CGCACTCTCTATGGCTTTGG 623572 >seq591 Length=826125 Score = 152 bits (168), Expect = 8e-33 Identities = 194/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| ||| || |||||||| || ||||| |||||||| || ||| Sbjct 717265 GCCAAGCGCCATCGCAAGGTTCTACGGGATAACATTCAGGGAATTACCAAGCCCGCGATC 717206 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||||||||||| || || |||||| |||| || ||| ||||||| || | | Sbjct 717205 CGTCGGTTGGCTCGTCGTGGAGGTGTGAAGCGTATCTCCGGGTTGATCTATGAGGAAACT 717146 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || |||| | ||| | |||||| || | ||||| | || | | ||| |||||| Sbjct 717145 CGCAATGTGCTCAAGGTGTTCCTCGAGTCGATTATCAAGGACTCGGTTACCTACACCGAG 717086 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || ||||| || || | |||||| | ||||| | ||||| || || || Sbjct 717085 CATGCCCGCCGCAAGACGGTGACTGCTATGGATGTTGTCTACTCGTTGAAGCGCCAGGGG 717026 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||||||||| || ||| Sbjct 717025 CGCACTTTGTATGGTTTTGGTAGCTAA 716999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074173233239