Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq492 89.7 5e-13 seq557 86.0 6e-12 >seq492 Length=1085467 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || || ||||| |||| || | ||| | || || Sbjct 148052 ATGCAGATTTTTGTGAAGACTTTGACAGGAAAGACGATTACGCTTGAAGTTGAGTCCTCG 147993 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||||| | || || |||||| ||||| || || || ||||||||||| Sbjct 147992 GACACAATCGAGAATGTTAAGACGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 147933 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || |||| || || || || || || || | | | | || ||||| ||| Sbjct 147932 CAGCGTCTGATTTTCGCTGGGAAGCAGCTTGAGGACGGACGTACTTTGAGTGACTACAAC 147873 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| ||||| ||||| | |||||||| || | ||| |||| || Sbjct 147872 ATTCAGAAAGAGTCTACATTGCATCTGGTGTTGCGTCTTCGAGGTGG 147826 >seq557 Length=252103 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || ||||| |||||||| | || || | ||| | || ||| Sbjct 155423 ATGCAGATTTTCGTGAAGACATTGACTGGAAAGACTATTACTCTTGAAGTTGAGTCATCG 155482 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || || ||||| ||||| || || || ||||||||||| Sbjct 155483 GATACGATTGAGAATGTGAAGACTAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAG 155542 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || |||| || |||||| || || || || | | | | | || ||||| ||| Sbjct 155543 CAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGAGTGACTACAAC 155602 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||| || || | || |||||||| Sbjct 155603 ATTCAGAAAGAGTCCACCCTTCACCTGGTCCT 155634 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || |||||||| | || || | ||| | || ||| Sbjct 155651 ATGCAGATTTTTGTGAAGACGTTGACTGGAAAGACTATTACGCTTGAAGTTGAGTCATCG 155710 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || || ||||| ||||| || || || ||||||||||| Sbjct 155711 GATACGATTGAGAATGTGAAGACTAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAG 155770 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || |||| || |||||| || || || || | | | | | || ||||| ||| Sbjct 155771 CAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGAGTGACTACAAC 155830 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||| || || | || |||||||| Sbjct 155831 ATTCAGAAAGAGTCCACCCTTCACCTGGTCCT 155862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478655680776560