Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq864 197 4e-45 seq932 194 4e-44 seq191 152 1e-31 seq708 150 5e-31 >seq864 Length=1598700 Score = 197 bits (218), Expect = 4e-45 Identities = 513/776 (66%), Gaps = 30/776 (4%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || || | || || ||| |||||| || || || ||| ||| |||| | Sbjct 469885 TTCACACATGCNTCNCCTACTTTGTTCAATGCGGGTACCTGTCGTCCTCAGCTGTCNAGT 469826 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 |||||| | || | |||| || ||||| ||||| || || | ||||| | || Sbjct 469825 TGCTTTTTACTCACTATGACTGATGATTCTATCGAAGGCATTTACGACACNNTGAANCGN 469766 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-C 363725 ||||| | ||||| ||| ||| ||||| || || | | ||||||| | | | | Sbjct 469765 TGTGCCGTCATTTCAAAGTCTGCCGGCGGTATCGGCCTCGCCGTCCACAACATCAGGGGC 469706 Query 363726 ACAGAACAGT--TACATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCT 363782 || | || || ||||| ||||| || |||| | ||||| | || || ||||| Sbjct 469705 ACT---CGGTCCTATATTCGAGGCACCAATGG-TACTTCCAATGGAATTGTCCCNATGCT 469650 Query 363783 TCGTGTGTTTGACAAT---ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 | |||| ||||| || || ||||| || || ||||| || || ||||| || || Sbjct 469649 NAGGGTGT---ACAATGACACCGCCAGGTATGTTGATCAGGGCGGCGGGAAGCGTAAGGG 469593 Query 363840 GGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCG 363899 || ||||| || || | ||||| ||||| || ||| | || || || || | | Sbjct 469592 CGCCTTTGCAATCTACTTGGAGCCCTGGCATGCAGACATTCTCGATTTNCTAGACTTGNG 469533 Query 363900 GAAAAA-CACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 ||| || || || || ||||| | ||||||| | ||||| ||||||| || ||| | Sbjct 469532 GAAGAATCATGGCAAGGAAGAGCA---GCGTGCAAGGGATCTCTTCTATGGNCTCTGGAT 469476 Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACA 364016 | | || |||||||| | || |||| | | ||||| ||||| || || | Sbjct 469475 TCCNGATTTGTTTATGAAAAGGGTNGAGGAAAATGNTTCATGGTCCCTCTTCTGTCCGAA 469416 Query 364017 CGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA 364076 || || ||||| | ||||| | |||| ||| | || | || ||| || || Sbjct 469415 TGAGGCACCCGGTCTGGCTGATGTTTATGGTGNCGAATTTGAGGAGCTNTACATGAAATA 469356 Query 364077 TGAATCGGAGGGAAAGGCTCGTAAG----ACAATTCCCGCACAGAAGCTATGGTTTGCCA 364132 || || || ||| | ||| | ||| || | ||| | |||| || | Sbjct 469355 CGA----GAAACAAGGGCGAGCAAGGGCNAAGATTGANGCGCGNAAGGTTTGGTACGCTA 469300 Query 364133 TCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACC 364192 | |||| ||||||||||||| ||||| || || ||| | || || ||||| || ||| Sbjct 469299 TTTTGGAGGCGCAGATTGAGACCGGAACCCCATACATGCTNTATAAGGATTCCTGTAACA 469240 Query 364193 GCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATT 364251 | ||| |||||||||| |||| ||||| |||| | | | || | ||||| |||||| Sbjct 469239 GGAAGAGCAACCAGCAGAACCTCGGTACCATTC-GTTGCTCNAATTTGTGTACTGAGATT 469181 Query 364252 ATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 |||||||||||| | ||||| ||| |||||| || || | || || || || || Sbjct 469180 ATTGAATACACCTCACCCGATGAGGTTGCCGTGTGCAANTTGGCCTCCATTGCACT 469125 >seq932 Length=795108 Score = 194 bits (214), Expect = 4e-44 Identities = 521/777 (67%), Gaps = 35/777 (5%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || || | || || ||| |||||| || || || ||| ||| |||| | Sbjct 205867 TTCACACATGCTTCACCTACTTTGTTCAATGCGGGTACCTGTCGTCCTCAGCTGTCAG-T 205925 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 |||||| | || | |||| || ||||| ||||| || || | ||||| || || | Sbjct 205926 TGCTTTTTACTCACTATGACTGATGATTCTATCGAAGGCATTTACGACAC-CTGAAACGT 205984 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-C 363725 ||||| | ||||| ||| ||| ||||| || || | | ||||||| | | | | Sbjct 205985 TGTGCCGTCATTTCAAAGTCTGCCGGCGGTATCGGCCTCGCCGTCCACAACATCAGGGGC 206044 Query 363726 ACAGAACAGT--TACATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCT 363782 || | || || ||||| ||||| || |||| | ||||| | || || ||||| Sbjct 206045 ACT---CGGTCCTATATTCGAGGCACCAATGG-TACTTCCAATGGAATTGTCCCTATGCT 206100 Query 363783 TCGTGTGTTTGACAAT---ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 | |||| ||||| || || ||||| || || ||||| || || ||||| || || Sbjct 206101 CAGGGTGT---ACAATGACACCGCCAGGTATGTTGATCAGGGCGGCGGGAAGCGTAAGGG 206157 Query 363840 GGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCG 363899 || ||||| || || | ||||| ||||| || ||| | || || || || | || Sbjct 206158 CGCCTTTGCAATCTACTTGGAGCCCTGGCATGCAGACATTCTCGATTTCCTAGACTTGCG 206217 Query 363900 GAAAAA-CACGGGAAA-AGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| || || || || |||| | ||||||| | ||||| ||||||| ||| ||| || Sbjct 206218 GAAGAATCATGGCAAGGAGAGCA---GCGTGCAAGGGATCTCTTCTATGGACTCTGGATT 206274 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACAC 364017 | || |||||||| | || |||| | | ||||| ||||| || || | Sbjct 206275 CCAGATTTGTTTATGAAAAGGGTCGAGGAAAATGCTTCATGGTCCCTCTTCTGTCCGAAT 206334 Query 364018 GAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTG--CTCTATACGAAAAGT 364075 || || ||||| | ||||| | |||||||| | || | ||||| | |||| | Sbjct 206335 GAGGCACCCGGTCTGGCTGATGTTTATGGTGACGAATTTGAGGAGCTCTACATGAAA--T 206392 Query 364076 ATGAATCGGAGGGAAAGGCTCGTAAGA-CAA---TTCCCGCACAGAAGCTATGGTTTGCC 364131 | || || || ||| | ||| ||| || || | ||| | |||| || Sbjct 206393 ACGA----GAAACAAGGGCGAGCAAGGGCAAAGATTGATGCGCGAAAGGTTTGGTACGCT 206448 Query 364132 ATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAAC 364191 || |||| ||||||||||||| ||||| || || ||| | || || ||||| || ||| Sbjct 206449 ATTTTGGAGGCGCAGATTGAGACCGGAACCCCATACATGCTCTATAAGGATTCCTGTAAC 206508 Query 364192 CGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGAT 364250 | ||| |||||||||| |||| ||||| |||| | | | || | ||||| ||||| Sbjct 206509 AGGAAGAGCAACCAGCAGAACCTCGGTACCATTC-GTTGCTCAAATTTGTGTACTGAGAT 206567 Query 364251 TATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 ||||||||||||| | ||||| ||| |||||| || || | || || || || || Sbjct 206568 TATTGAATACACCTCACCCGATGAGGTTGCCGTGTGCAATTTGGCCTCCATTGCACT 206624 >seq191 Length=259989 Score = 152 bits (168), Expect = 1e-31 Identities = 395/592 (67%), Gaps = 10/592 (2%) Strand=Plus/Minus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 || || |||||||| || |||||| | |||| ||| ||| || || ||| | ||| Sbjct 121184 TTCCCGCTTCTCACGACCAAGCGAGTGTTTTGGCGGGGTGTTGCGGAGGAGCTTTTTTGG 121125 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 |||||| ||||| || |||| || || ||| || || ||||||||| Sbjct 121124 TTTATTAAGGGAAGCACTGATGCCAAATTGCTGACAGAGAAGGGGGTCCGAATTTGGGAA 121065 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGAT 111494 |||||||||||| |||| | || || || || || ||||| || || Sbjct 121064 GGAAATGGATCAAAAAGCTTTTTGGACTCTCGGGGGTTTACAGATCGGGAAGAGGGAGAC 121005 Query 111495 CTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCA- 111553 || || || || || |||||||||||||| |||||||| || || || | || || | | Sbjct 121004 CTTGGTCCCGTGTATGGATTTCAATGGCGACACTTTGGCGCGGAGTATACAAACAAGGAT 120945 Query 111554 --CGACTCATATGATTCACAGGGAACTGATCAATT-ACAGAATGTCATTGATCAAATTAA 111610 ||||| | | || | ||||| ||||| || || || ||| ||||| |||| Sbjct 120944 TGCGACT-ACA-GAGGGGCGGGGAAG-GATCAGTTGACTGA-TGTAATTGACACAATTGT 120889 Query 111611 GAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAA 111670 || ||||||| | || || || || || |||||||| ||| || || Sbjct 120888 TAATAACCCAAACGACAGGCGAATGATCATTTCAGCTTGGAACCCGTGTGCCACTGACAA 120829 Query 111671 AATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTC 111730 |||||||||||||| || || ||| | |||||| ||||| |||| ||| || Sbjct 120828 GATGGCACTTCCACCGTGCCACCTTCTAGCCCAGTTCTATGTCGCAAACGGCGAGCTATC 120769 Query 111731 ATGCCAAATGTATCAGCGAT-CTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAA 111789 ||| |||||||| || || | |||| || || || ||||| || ||||| ||||| ||| Sbjct 120768 ATGTCAAATGTACCAACGCTCCTGC-GACATGGGACTTGGGGTACCGTTCAATATAGCAT 120710 Query 111790 GTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCA 111849 ||| | || || || || ||||||| | | ||| ||||| || || || || Sbjct 120709 CTTATTCCCTGCTAACATGTCTAATCGCCAAGGTGACAGGGCTCAACCCCGGAGACTTTG 120650 Query 111850 TTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAA 111901 | || || | || || | ||||| |||| || |||||||| ||||| || Sbjct 120649 TCCATGTGTTGGGGGACACACATGTGTACAACAATCACATTGAGGCACTCAA 120598 >seq708 Length=363590 Score = 150 bits (166), Expect = 5e-31 Identities = 396/592 (67%), Gaps = 12/592 (2%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 || || |||||||| || |||||| | |||| ||| ||| || || ||| | ||| Sbjct 200347 TTCCCGCTTCTCACGACCAAGCGAGTGTTTTGGC-GGGTGTTGCGGAGGAGCTTTTTTGG 200405 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 |||||| ||||| || |||| || || ||| || || ||||||||| Sbjct 200406 TTTATTAAGGGAAGCACTGATGCCAAACTGCTGACAGAGAAGGGGGTCCGAATTTGGGAA 200465 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGAT 111494 |||||||||||| |||| | || || ||| || || ||||| || || Sbjct 200466 GGAAATGGATCAAAAAGCTTTTTGGACTCTCGGGGT-TTACAGATCGGGAAGAGGGAGAC 200524 Query 111495 CTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCA- 111553 || || || || || |||||||||||||| |||||||| || || || | || || | | Sbjct 200525 CTTGGTCCTGTGTATGGATTTCAATGGCGACACTTTGGCGCGGAGTATACAAACAAGGAT 200584 Query 111554 --CGACTCATATGATTCACAGGGAACTGATCAATT-ACAGAATGTCATTGATCAAATTAA 111610 ||||| | | || | ||||| ||||| || || || ||| ||| | |||| Sbjct 200585 GGCGACT-ACA-GAGGGGCGGGGAAG-GATCAGTTGACTGA-TGTGATTAACACAATTGT 200640 Query 111611 GAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAA 111670 || ||||||| | || || || || || |||||||| ||| || || Sbjct 200641 TAATAACCCAAACGACAGGCGAATGATCATTTCAGCTTGGAACCCGTGTGCCACTGACAA 200700 Query 111671 AATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTC 111730 |||||||||||||| || || ||| | |||||| ||||| |||| ||| || Sbjct 200701 GATGGCACTTCCACCGTGCCACCTTCTAGCCCAGTTCTATGTCGCAAACGGCGAGCTATC 200760 Query 111731 ATGCCAAATGTATCAGCGAT-CTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAA 111789 ||| |||||||| || || | |||| || || || ||||| || ||||| ||||| ||| Sbjct 200761 ATGTCAAATGTACCAACGCTCCTGC-GACATGGGACTTGGGGTACCGTTCAATATAGCAT 200819 Query 111790 GTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCA 111849 ||| | || || || || ||||||| | | ||| |||||||| || || || Sbjct 200820 CTTATTCGCTGCTAACATGTCTAATCGCCAAGGTGACAGGGCTCAAACCCGGAGACTTTG 200879 Query 111850 TTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAA 111901 | || || | || || | ||||| |||| || |||||||| ||||| || Sbjct 200880 TCCATGTGTTGGGGGACACACATGTGTACAACAATCACATTGAGGCACTCAA 200931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303334846778186