Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq492 107 2e-18 seq557 87.8 2e-12 >seq492 Length=1085467 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || ||||| ||||||| | ||||| ||| || Sbjct 148052 ATGCAGATTTTTGTGAAGACTTTGACAGGAAAGACGATTACGCTTGAAGTTGAGTCCTCG 147993 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || || |||||| ||||| || || || ||||||||||| Sbjct 147992 GACACAATCGAGAATGTTAAGACGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 147933 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||||| || || ||||| || || || | | | | || || || ||| Sbjct 147932 CAGCGTCTGATTTTCGCTGGGAAGCAGCTTGAGGACGGACGTACTTTGAGTGACTACAAC 147873 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| ||||| |||||| | ||| | ||||| Sbjct 147872 ATTCAGAAAGAGTCTACATTGCATCTGGTGTT 147841 >seq557 Length=252103 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||||| |||||||| | ||||| | ||||| ||| | Sbjct 155423 ATGCAGATTTTCGTGAAGACATTGACTGGAAAGACTATTACTCTTGAAGTTGAGTCATCG 155482 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || || ||||| ||||| || || || ||||||||||| Sbjct 155483 GATACGATTGAGAATGTGAAGACTAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAG 155542 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||||| || ||||||||| || || || | | | | || || || ||| Sbjct 155543 CAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGAGTGACTACAAC 155602 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| ||||| || || |||| Sbjct 155603 ATTCAGAAAGAGTCCACCCTTCA 155625 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || |||||||| | ||||| | ||||| ||| | Sbjct 155651 ATGCAGATTTTTGTGAAGACGTTGACTGGAAAGACTATTACGCTTGAAGTTGAGTCATCG 155710 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || || ||||| ||||| || || || ||||||||||| Sbjct 155711 GATACGATTGAGAATGTGAAGACTAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAG 155770 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||||| || ||||||||| || || || | | | | || || || ||| Sbjct 155771 CAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGAGTGACTACAAC 155830 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| ||||| || || |||| Sbjct 155831 ATTCAGAAAGAGTCCACCCTTCA 155853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429930115654065