Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq475 122 7e-23 seq99 109 4e-19 seq557 91.5 1e-13 seq492 86.0 5e-12 >seq475 Length=1546706 Score = 122 bits (134), Expect = 7e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || || | || |||| ||| || || ||||||||||| ||||| || || | Sbjct 934393 CCCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTTTGGATGTTATAATCCGA 934452 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || |||| | ||||||||||||| || || ||| |||| || |||||||||||| ||| Sbjct 934453 CAAGGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGG 934512 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || |||| ||| || | | || |||| | || Sbjct 934513 AATGCCCTCCTTGTCTTGGATCTTTG--ACTTGACATTTGCAACGTTGTCCGACGATTCT 934570 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || ||||| || || ||||| ||||||||||| Sbjct 934571 ACCTCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCAT 934620 >seq99 Length=379092 Score = 109 bits (120), Expect = 4e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || || | || |||| ||| || || ||||||||| | |||||||| ||| | Sbjct 173857 CCCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTTGG-ATGTTGTAATCGAC 173915 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | |||| | ||||||||||||| || || ||| |||| || |||||||||||| ||| Sbjct 173916 AA-GGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGG 173974 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || |||| ||| || | | | |||| | || Sbjct 173975 AATGCCCTCCTTGTCTTGGATCTTTG--ACTTGACATTTGCAATGTTGTCCGATGATTCT 174032 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || ||||| || || ||||| ||||||||||| Sbjct 174033 ACCTCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCAT 174082 >seq557 Length=252103 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || ||||||||||| || ||||||||||| | Sbjct 155194 CCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 155135 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||| | || ||||| || | || || ||||| || || | || Sbjct 155134 AAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATC--CGGGG 155077 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| ||| | | |||||| | | | |||||| || |||| Sbjct 155076 ATGCCTTCCTTGTCCTGAATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGACTCCACC 155017 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || || |||||||||| ||||| || ||||||||||| Sbjct 155016 TCAAGGGTAATAGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 154970 >seq492 Length=1085467 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||| || || |||||||||||| || ||| | ||| Sbjct 147157 AGCACCAAGTGCAGTGTAGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTACGACCATCC 147216 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| || |||| || ||||| ||||| ||| | ||||| ||||| Sbjct 147217 TCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCC 147276 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| | |||||| | | | || || | ||| ||| | || || ||| Sbjct 147277 TGAATTTTCGTCTTCACATTCTCTATCGTATCCGATGACTCAACTTCAAGCGTAATCGTT 147336 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||| || || |||||||||||||| Sbjct 147337 TTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405082455737770