Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq492 104 2e-17 seq475 100 2e-16 seq99 98.7 9e-16 seq557 96.9 3e-15 >seq492 Length=1085467 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || ||||| | || || | || ||||||||||| Sbjct 147140 ATGCAGATTTTTGTGAAGACGCTTACGGGTAAGACGATTACGCTTGAGGTGGAGTCGTCG 147081 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| ||||| || || ||||| || ||||| Sbjct 147080 GACACCATTGAAAATGTGAAGACCAAGATCCAGGACAAGGAGGGTATTCCGCCCGACCAG 147021 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || ||||| || | || |||| ||| || || |||||||||| Sbjct 147020 CAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACCTTGAGCGATTACAAC 146961 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || | ||||| Sbjct 146960 ATCCAGAAGGAGTCTACTCTTCACCTTGTGCT 146929 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | || || | ||||| ||||| || Sbjct 148052 ATGCAGATTTTTGTGAAGACTTTGACAGGAAAGACGATTACGCTTGAAGTTGAGTCCTCG 147993 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | ||| | || | ||| ||||| || || ||||| || || || Sbjct 147992 GACACAATCGAGAATGTTAAGACGAAGATTCA-GGACAAGGAGGGTATTCCTCCCGATCA 147934 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| || || || || | || || | || ||| || | || ||||| Sbjct 147933 GCAGCGTCTGATTTTCGCTGGGAAGCAGCTTGAGGACGGACGTACTTTGAGTGACTACAA 147874 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||||| ||||| || || | ||| | ||| Sbjct 147873 CATTCAGAAAGAGTCTACATTGCATCTGGTG 147843 >seq475 Length=1546706 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 || || ||||| || || || |||||| | ||||| || ||||||| | || || || Sbjct 934626 GGCACCATGCAGATTTTCGTCAAGACTCTAACCGGGAAGACCATCACCCTTGAGGTAGAA 934567 Query 25053 TCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 ||||| |||| | | | ||| ||| ||| ||||| || || ||||| | Sbjct 934566 TCGTCGGACAACGTTGCAAATGTCAAGTCAAAGATCCAAGACAAGGAGGGCATTCCTCAG 934507 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 ||||||||||| | ||||||||||| || ||||| || || || || || || ||| Sbjct 934506 GACCAACAGCGTCTGATTTTTGCCGGAAAGCAATTGGAGGACGACCGAACCTTGTCGGAT 934447 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || || || || ||||| ||||| Sbjct 934446 TATAACATCCAAAAGGAGTCAACCCTCCATTTGGTGCT 934409 >seq99 Length=379092 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 || || ||||| || || || |||||| | ||||| || ||||||| | || || || Sbjct 174088 GGCACCATGCAGATTTTCGTCAAGACTCTAACCGGGAAGACCATCACCCTTGAGGTAGAA 174029 Query 25053 TCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 || || |||| || | | ||| ||| ||| ||||| || || ||||| | Sbjct 174028 TCATCGGACAACATTGCAAATGTCAAGTCAAAGATCCAAGACAAGGAGGGCATTCCTCAG 173969 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 ||||||||||| | ||||||||||| || ||||| || || || || || | | |||| Sbjct 173968 GACCAACAGCGTCTGATTTTTGCCGGAAAGCAATTGGAGGACGACCGAAC-CTTGTCGAT 173910 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| | || ||| || || || || ||||| ||||| Sbjct 173909 TACAACA-TCCAAAGGAGTCAACCCTCCATTTGGTGCT 173873 >seq557 Length=252103 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || ||||||||||| || | || || | || |||||||| || Sbjct 154970 ATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACTATTACCCTTGAGGTGGAGTCCTCG 155029 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| ||| ||||| | || | ||| ||||| ||||| || | || || || Sbjct 155030 GACACTATTGAGAATGTGAAGACGAAGATTCA-GGACAAGGAAGGCAT--CCCCGGATCA 155086 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || |||||||| || | || || | ||| ||| || | || ||||| Sbjct 155087 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGAGTGACTACAA 155146 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| || || ||||| || || Sbjct 155147 CATTCAGAAGGAGTCCACCCTTCA 155170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433322069229245