Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq28 132 5e-26 seq489 116 4e-21 >seq28 Length=612614 Score = 132 bits (146), Expect = 5e-26 Identities = 363/549 (66%), Gaps = 19/549 (3%) Strand=Plus/Plus Query 93106 ATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 ||| || || || || ||||| ||||| || || || ||||| || | | || || Sbjct 279218 ATGCAATCCCTCATCACGTGAGATCAATTCGTTCGAAAACGTTAATCCAGACATCAACCC 279277 Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA-GaaaaaaaTATACCTTCCACGG 93224 |||||||| | | || || | | |||||| ||| || || || || || ||||| | Sbjct 279278 GCGTTTCTTCAAGTAGAAAATCGCA-CAAAACGACCCTGAGAAGAAAATCCCCTCCACAG 279336 Query 93225 CTGCAAATGCCACAATACGTTCGGCAAAATT----TGCGGAATTACTGCTGATCCATTTT 93280 ||||||| ||||| | || || ||||| | |||| || | |||||| Sbjct 279337 CTGCAAACGCCACCAATCGCTCCGCAAAGCTACTCTGCG--AT-----CCAATCCATCGA 279389 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 | ||||| || ||||| | | ||||| | ||||| || | || || | Sbjct 279390 ATCGCCCATTCCGCTTTGCGAGTCACGCAAGGAATCTCCTCGATCGCTCTGAAAAGCCGA 279449 Query 93341 TCTCGCTC-GTCCGAATCTCGT--ATGTATGTATCGATTAACAGAGAATACATTTCAGAA 93397 || ||| || | | || | || || ||||| | | ||| |||||| |||| || Sbjct 279450 TCCTTCTCAGT---ATTGTCCTTGATATACGTATCCAACAGCAGCGAATACGTTTCCGAG 279506 Query 93398 TGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACT 93457 || ||||||||||| || ||||| | ||||||||||| || |||| | ||| || Sbjct 279507 TGCACATTCTCCATCGCCGCCTGGAACGCATAGAAACATCTGGCCTCCGGCAACTGTACG 279566 Query 93458 TCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517 || | | ||||||||||||| | ||||| || || ||||| || || ||||| || Sbjct 279567 TCGTTACAAAATCTCTCTACCAAGTTTTCCAGTACAATTCCATCCGACGCCGCAAAGAAG 279626 Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGA 93577 ||||| | || || ||||| |||| |||| ||| ||||| || ||| Sbjct 279627 GCCAACACCGTTTTGATGAAATGCCTCTCCCCATCCGACAGCGATTCCCAGTCCTTCAGA 279686 Query 93578 TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATA 93637 ||| ||||||||||| ||| ||| | ||||| |||| || | ||| ||||||| Sbjct 279687 TCTCCTGAAAGATCGATTTCCTCGGCCGTCCAGAACGCCGCCTGATGTTTCTTGTACAGT 279746 Query 93638 TCCCATATG 93646 ||||| ||| Sbjct 279747 TCCCAGATG 279755 >seq489 Length=1032923 Score = 116 bits (128), Expect = 4e-21 Identities = 198/285 (69%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || ||||| | | ||| |||||| |||| || || ||||||||||| || ||| Sbjct 354828 ATATACGTATCCAACAGCAGCGAATACGTTTCCGAGTGCACATTCTCCATCGCCGCCTGG 354769 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || | |||||||| || |||| | ||| || || | | ||||||||||||| | Sbjct 354768 AA--CGCAAAAACATCTGGCCTCCGGCAACTGTACGTCGTTACAAAATCTCTCTACCAAG 354711 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||| || || ||||| || || ||||| || ||||| | || || ||||| Sbjct 354710 TTTTCCAGTACAATTCCATCCGACGCCGCAAAGAAGGCCAACACCGTTTTGATGAAATGC 354651 Query 93542 TTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCG 93601 |||| |||| ||| ||||| || |||||| |||||||||| ||| ||| Sbjct 354650 CTCTCCCCATCCGACAGCGATTCCCAGTCCTTCAGATCTCCCGAAAGATCGATTTCCTCG 354591 Query 93602 ACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATG 93646 | |||| ||||| || | ||| ||||||| ||||| ||| Sbjct 354590 GCCGTCC-AAACGCCGCCTGATGTTTCTTGTACAGTTCCCAGATG 354547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556852983066520