Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq391 111 3e-19 seq523 109 1e-18 >seq391 Length=1319552 Score = 111 bits (122), Expect = 3e-19 Identities = 236/348 (68%), Gaps = 7/348 (2%) Strand=Plus/Plus Query 218530 AAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGAT 218589 |||||||||||||| |||||| | ||| | || |||||||| ||||| || ||| Sbjct 228196 AAGGAGCTCATTCTGTTCTCGTCGCC-GATAACGCCCGCTCTATTCCAAGCGTAGTTGAT 228254 Query 218590 GGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTG----GT 218645 || | ||||| || || || || | |||||||| |||||||| || || | Sbjct 228255 GGGTTGAAGCCTTCCCAACGCAAAGTGCTCTTTGCATGCTTCAAGCGAAAGCTAACGCGA 228314 Query 218646 TCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCA 218705 ||| || || ||||| |||||| | |||| ||||| | ||| | | | ||||| || Sbjct 228315 TCA-GATATCAAGGTTGCTCAGCTCGCTGGGTATGTCGC-GAACATGCCGCGTACCACCA 228372 Query 218706 CGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAA 218765 || || | || ||| ||||||| || | |||||| ||| || || || Sbjct 228373 TGGCGAAATGTCGCTTCAGTCGACCATTGTCGGTCTTGCACAGAACTTCGTCGGTTCCAA 228432 Query 218766 CAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGA 218825 ||| |||||||| ||||| ||||||||||| |||| || || ||||| || Sbjct 228433 TAACGCAAACTTGCTAGTCCCCGCTGGTCAGTTTGGAACTCGCCTGCAAGGCGGAAAAGA 228492 Query 218826 TAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCG 218873 || ||| | ||||| ||||| ||||||||| | ||| | || || Sbjct 228493 CGCAGCATCTTCTAGGTACATCTTCACAAAGTTGGCACCCATCACACG 228540 >seq523 Length=1527182 Score = 109 bits (120), Expect = 1e-18 Identities = 234/348 (67%), Gaps = 5/348 (1%) Strand=Plus/Minus Query 218530 AAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGAT 218589 |||||||||||||| |||||| ||| | || |||||||| ||||| || ||| Sbjct 4150 AAGGAGCTCATTCTGTTCTCGGTCGCCGATAACGCCCGCTCTATTCCAAGCGTAGTTGAT 4091 Query 218590 GGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTG----GT 218645 || | ||||| || || || || | |||||||| |||||||| || || | Sbjct 4090 GGGTTGAAGCCTTCCCAACGCAAAGTGCTCTTTGCATGCTTCAAGCGAAAGCTAACGCGA 4031 Query 218646 TCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCA 218705 ||| || || ||||| |||||| | |||| || || | ||| | | | ||||| || Sbjct 4030 TCA-GATATCAAGGTTGCTCAGCTCGCTGGGTACGTCGCTGAACATGCCGCGTACCACCA 3972 Query 218706 CGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAA 218765 || || | || ||| ||||||| || | |||||| ||| || || || Sbjct 3971 TGGCGAAATGTCGCTTCAGTCGACCATTGTCGGTCTTGCACAGAACTTCGTCGGTTCCAA 3912 Query 218766 CAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGA 218825 ||| |||||||| ||||| ||||||||||| |||| || || ||||| || Sbjct 3911 TAACGCAAACTTGCTAGTCCCCGCTGGTCAGTTTGGAACTCGCCTGCAAGGCGGAAAAGA 3852 Query 218826 TAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCG 218873 || ||| | ||||| ||||| ||||||||| | ||| | || || Sbjct 3851 CGCAGCATCTTCTAGGTACATCTTCACAAAGTTGGCACCCATCACACG 3804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027822011034443