Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_008720.1 Length=70153 Score E Sequences producing significant alignments: (Bits) Value seq374 102 4e-17 seq360 102 4e-17 seq347 102 4e-17 seq331 102 4e-17 seq265 102 4e-17 seq262 102 4e-17 seq239 102 4e-17 >seq374 Length=37716 Score = 102 bits (112), Expect = 4e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 33052 TACAGGATATAGCTCAGTTTGGTAGAGCGTCTGCTTTGGGAGCAGAATGTCGTAGGTTCG 33111 ||| ||||||||| ||||||||||| ||| ||||||||||||||| |||||| |||||| Sbjct 14304 TACGGGATATAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCA 14363 Query 33112 AATCCTGCTATCCTGACCAAATTA 33135 ||||||||||||| || | |||| Sbjct 14364 AATCCTGCTATCCCGATTATATTA 14387 >seq360 Length=28839 Score = 102 bits (112), Expect = 4e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 33052 TACAGGATATAGCTCAGTTTGGTAGAGCGTCTGCTTTGGGAGCAGAATGTCGTAGGTTCG 33111 ||| ||||||||| ||||||||||| ||| ||||||||||||||| |||||| |||||| Sbjct 27946 TACGGGATATAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCA 28005 Query 33112 AATCCTGCTATCCTGACCAAATTA 33135 ||||||||||||| || | |||| Sbjct 28006 AATCCTGCTATCCCGATTATATTA 28029 >seq347 Length=42671 Score = 102 bits (112), Expect = 4e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 33052 TACAGGATATAGCTCAGTTTGGTAGAGCGTCTGCTTTGGGAGCAGAATGTCGTAGGTTCG 33111 ||| ||||||||| ||||||||||| ||| ||||||||||||||| |||||| |||||| Sbjct 11307 TACGGGATATAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCA 11248 Query 33112 AATCCTGCTATCCTGACCAAATTA 33135 ||||||||||||| || | |||| Sbjct 11247 AATCCTGCTATCCCGATTATATTA 11224 >seq331 Length=49663 Score = 102 bits (112), Expect = 4e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 33052 TACAGGATATAGCTCAGTTTGGTAGAGCGTCTGCTTTGGGAGCAGAATGTCGTAGGTTCG 33111 ||| ||||||||| ||||||||||| ||| ||||||||||||||| |||||| |||||| Sbjct 46546 TACGGGATATAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCA 46605 Query 33112 AATCCTGCTATCCTGACCAAATTA 33135 ||||||||||||| || | |||| Sbjct 46606 AATCCTGCTATCCCGATTATATTA 46629 >seq265 Length=48727 Score = 102 bits (112), Expect = 4e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 33052 TACAGGATATAGCTCAGTTTGGTAGAGCGTCTGCTTTGGGAGCAGAATGTCGTAGGTTCG 33111 ||| ||||||||| ||||||||||| ||| ||||||||||||||| |||||| |||||| Sbjct 27503 TACGGGATATAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCA 27444 Query 33112 AATCCTGCTATCCTGACCAAATTA 33135 ||||||||||||| || | |||| Sbjct 27443 AATCCTGCTATCCCGATTATATTA 27420 >seq262 Length=94814 Score = 102 bits (112), Expect = 4e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 33052 TACAGGATATAGCTCAGTTTGGTAGAGCGTCTGCTTTGGGAGCAGAATGTCGTAGGTTCG 33111 ||| ||||||||| ||||||||||| ||| ||||||||||||||| |||||| |||||| Sbjct 70229 TACGGGATATAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCA 70288 Query 33112 AATCCTGCTATCCTGACCAAATTA 33135 ||||||||||||| || | |||| Sbjct 70289 AATCCTGCTATCCCGATTATATTA 70312 >seq239 Length=192504 Score = 102 bits (112), Expect = 4e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 33052 TACAGGATATAGCTCAGTTTGGTAGAGCGTCTGCTTTGGGAGCAGAATGTCGTAGGTTCG 33111 ||| ||||||||| ||||||||||| ||| ||||||||||||||| |||||| |||||| Sbjct 120097 TACGGGATATAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCA 120156 Query 33112 AATCCTGCTATCCTGACCAAATTA 33135 ||||||||||||| || | |||| Sbjct 120157 AATCCTGCTATCCCGATTATATTA 120180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 224361729217142