Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq214 196 9e-45 seq475 161 2e-34 seq99 154 3e-32 seq557 136 7e-27 seq492 134 3e-26 seq111 87.8 3e-12 >seq214 Length=196125 Score = 196 bits (216), Expect = 9e-45 Identities = 364/531 (69%), Gaps = 14/531 (3%) Strand=Plus/Plus Query 268209 CCCCAGTTGCAATCACAAAGTCCTCTGGC---TCAGGAGACTGGAGCATTTTCCACATTG 268265 |||| || || | ||| |||| |||||| ||| | ||||||||| |||||| | Sbjct 155100 CCCCGGTGGCTACGACATAGTCGTCTGGCGTTTCATGT---TGGAGCATTAACCACATGG 155156 Query 268266 CTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACA 268325 | ||||| |||||| | |||| ||||| ||||||| ||||| | || |||||| | | Sbjct 155157 CCTCGACGTAGTCCGGGGCATATCCCCAGTCGCGCTGGGCGTCGAGATTGCCGAGGTAGA 155216 Query 268326 GGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGA 268385 | | | || ||||| ||| | | | || | |||| || | ||||||||||| | Sbjct 155217 GTCGCTGTTGAAGGCCGAACTTGATGTGGGCCACCGCGCGGGTCACCTTTCGGGTCACAA 155276 Query 268386 ACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGC 268445 | || ||||| || | ||| ||||||||||||||||| || ||||| ||||| | Sbjct 155277 AGGTTTCGCCGCGGCGCTCGCTTTCGTGGTTGAAGAGGATCCCATTGCAGGCGAAGAGCT 155336 Query 268446 CATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACG 268505 |||| ||||| ||||| || || |||| | || || ||| || |||| | Sbjct 155337 CATAGGCCTCCCGGTAATTGACAACCGCATGAAACGCGAAAGCCTTGGCGCAGCCGTAGG 155396 Query 268506 GAGAACGTGGATGGAAGGGCGTCGTGATC-TTTTGAGGGATTTCTCGGACTTTGCCAAAG 268564 || ||||| | ||| ||||| | || | || || ||||| | || || |||||| Sbjct 155397 GACTTCGTGGGTAGAACGGCGT-ACGCTCGCTCTGGGGTATTTCCTGAACCTTACCAAAG 155455 Query 268565 AGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATT 268624 ||||| ||| |||| |||||||| || | || |||| ||| ||||| Sbjct 155456 AGCTCTGAGCTCGACGCTTGGTAAAAGCGCGGTG------CGAGCCCGACTTCGCGGATC 155509 Query 268625 GCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCG 268684 || || | | || || || |||||||| ||| ||| | || |||||||| || ||| Sbjct 155510 GCTTCCAATAGGCGCAGTGTGCCCATGCCGGTCACATCCACCGTGTACTCCGGGATATCG 155569 Query 268685 AATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGT 268735 || || ||| | |||||| |||||||| ||||| || | ||| |||||| Sbjct 155570 AAGGAGACCCGCACATGGGATTGGGCGCCGAGGTTGTAGATCTCGTCCGGT 155620 >seq475 Length=1546706 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || || | ||||| || || || ||||| ||||||||||||||||| || Sbjct 934394 CCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTTTGGATGTTATAATCCGAC 934453 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | | || || || ||||| ||||| || || || | |||||||| | ||| Sbjct 934454 AAGGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGA 934513 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||||| |||||| | | | |||| | |||||||| Sbjct 934514 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACATTTGCAACGTTGTCCGACGATTCTACC 934573 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || || ||||||||||| |||||||| Sbjct 934574 TCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCAT 934620 >seq99 Length=379092 Score = 154 bits (170), Expect = 3e-32 Identities = 172/227 (76%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || || | ||||| || || || ||||| ||| ||||||| |||||| Sbjct 173858 CCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTT-GGATGTTGTAATCGACA 173916 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | | || || || ||||| ||||| || || || | |||||||| | ||| Sbjct 173917 AG-GTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGA 173975 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||||| |||||| | ||| |||| | ||||||||| Sbjct 173976 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACATTTGCAATGTTGTCCGATGATTCTACC 174035 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || || ||||||||||| |||||||| Sbjct 174036 TCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCAT 174082 >seq557 Length=252103 Score = 136 bits (150), Expect = 7e-27 Identities = 167/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || |||||||| || || ||||| || || Sbjct 154968 CCACCTCGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 154909 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| || ||||| || || | || |||||||| | Sbjct 154908 AAGGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCGGGGG-- 154851 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || || || | ||||||| ||| || ||||||| || || || Sbjct 154850 ATGCCTTCCTTGTCCTGGATTTTGGTCTTGACGTTCTCAATCGTGTCTGAGGACTCGACC 154791 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| ||||| |||||||||||||| || || |||||||| Sbjct 154790 TCGAGTGTGATTGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 154744 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||| ||| || ||||||||||| || ||||| || || Sbjct 155649 CCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTC 155590 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| |||||||| || || | || || ||||| ||| Sbjct 155589 AAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGA 155530 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| || ||| || || || | ||| || ||| Sbjct 155529 ATACCCTCCTTGTCCTGGATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACT 155470 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || ||||| || | ||||| ||||| |||||||| Sbjct 155469 TCAAGAGTAATAGTCTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 155423 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||| ||| || ||||||||||| || ||||| || || Sbjct 155877 CCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTC 155818 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| |||||||| || || | || || ||||| ||| Sbjct 155817 AAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGA 155758 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| || ||| || || || | ||| || ||| Sbjct 155757 ATACCCTCCTTGTCCTGGATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACT 155698 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || ||||| || | ||||| || || |||||||| Sbjct 155697 TCAAGCGTAATAGTCTTTCCAGTCAACGTCTTCACAAAAATCTGCAT 155651 Score = 113 bits (124), Expect = 8e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||||||| | || | || |||||||| ||||| || || || Sbjct 156105 CCACCGCGGAGGCGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTC 156046 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| || ||||| || | | || |||||||| ||| Sbjct 156045 AAGGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGA 155986 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || || ||||| | ||| || || || ||||| | ||||| || Sbjct 155985 ATACCCTCCTTATCCTGGATCTTGGTCTTCACATTTTCAATCGTGTCCGACGATTCCACC 155926 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || ||||| || ||||| || || |||||||| Sbjct 155925 TCAAGCGTAATCGTCTTACCCGTAAGCGTCTTCACAAAAATCTGCAT 155879 Score = 109 bits (120), Expect = 1e-18 Identities = 161/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||| ||| || |||||||| || || ||||| || || Sbjct 155194 CCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 155135 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| |||||||| || || | || || || || | Sbjct 155134 AAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGGG-- 155077 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| |||||||| | ||| || ||| || ||||| | || || || Sbjct 155076 ATGCCTTCCTTGTCCTGAATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGACTCCACC 155017 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || ||||| || | || || ||||| |||||||| Sbjct 155016 TCAAGGGTAATAGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 154970 Score = 104 bits (114), Expect = 4e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 68239 CGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTG 68298 |||| ||||||||||| | || | || |||||||| ||||| || || || | | Sbjct 156329 CGCGGAGGCGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGG 156270 Query 68299 TCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGC 68358 | | ||||| || | |||||| || ||||| || | | || |||||||| ||||| | Sbjct 156269 TTCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATAC 156210 Query 68359 CTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCA 68418 | ||||| || || ||||| | ||| || || || || || | ||| || ||||| | Sbjct 156209 CCTCCTTATCCTGGATCTTGGTCTTCACATTTTC-ATCGTATCCGATGACTCAACTTCAA 156151 Query 68419 -AGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || || ||||| || | ||||| ||||| |||||||| Sbjct 156150 GCGGTAATAGTCTTTCCAGTCAACGTCTTAACGAAAATCTGCAT 156107 >seq492 Length=1085467 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||| ||| || |||||||| || || ||||| || || Sbjct 148054 CCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 148113 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| || ||||| || || | || ||||| || || Sbjct 148114 AACGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGG 148173 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || || || | ||||||| ||| || ||||| | || || || Sbjct 148174 ATGCCTTCCTTGTCCTGGATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACC 148233 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| ||||| |||||||||||||| || || |||||||| Sbjct 148234 TCGAGTGTGATTGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 148280 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || |||||||| || || ||||| || || Sbjct 148282 CCACCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 148341 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| || ||||| || || | || ||||| || || Sbjct 148342 AACGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGG 148401 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || || || | ||||||| ||| || ||||| | || || || Sbjct 148402 ATGCCTTCCTTGTCCTGGATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACC 148461 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| ||||| |||||||||||||| || || |||||||| Sbjct 148462 TCGAGTGTGATTGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 148508 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || |||||||| || || ||||| || || Sbjct 148510 CCACCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 148569 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| || ||||| || || | || ||||| || || Sbjct 148570 AACGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGG 148629 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || || || | ||||||| ||| || ||||| | || || || Sbjct 148630 ATGCCTTCCTTGTCCTGGATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACC 148689 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| ||||| |||||||||||||| || || |||||||| Sbjct 148690 TCGAGTGTGATTGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 148736 >seq111 Length=146921 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/190 (71%), Gaps = 11/190 (6%) Strand=Plus/Minus Query 224975 GCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGG 225034 || |||||||| | ||||| | |||||| ||| |||||| ||| |||||||| || ||| Sbjct 60834 GCGTACCGCCAACGAATGTATTCGTTGGGAGTCTTGTCCAAGTGATTCTCAATGTGATGG 60775 Query 225035 AAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGA 225094 || |||||||| || | ||| | || || ||| | |||||||| ||| ||| || Sbjct 60774 AATGCATGCTGAGCAATGTAGCCAATACGGGCGTTTGCGTGCTTCCAGACATTGCCA-GA 60716 Query 225095 GTCGGTTGTGCCTCG-----CCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCAT 225149 ||| |||||| || || | | ||||| | || | ||| || ||||| | Sbjct 60715 GTC-----TGCCTCAAGTTCCCTGTCAACAACTTGACAATTGTTGACTTCCCAGCACCGT 60661 Query 225150 TGGGGCCAAT 225159 |||||||||| Sbjct 60660 TGGGGCCAAT 60651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921609462725560