Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq932 132 9e-26 seq864 123 5e-23 >seq932 Length=795108 Score = 132 bits (146), Expect = 9e-26 Identities = 799/1266 (63%), Gaps = 34/1266 (3%) Strand=Plus/Minus Query 244079 ACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTG 244138 |||| ||| |||| || | ||||||||| || ||||| | ||| ||| | |||| Sbjct 207215 ACCAAATGCGTGTTTACGATGCAAAACTCTCCGGATAGCACTCTGCGAGTGTACAAGTTG 207156 Query 244139 CTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGC 244198 || ||||| | || ||| ||||||||| ||||| | ||| ||| || ||| Sbjct 207155 GACGTGTAAGGCTCAAAGCACTCATTGTTGCCCAAAATCTGGGACGTTGACGCCGTTGGC 207096 Query 244199 ATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCG 244258 || || | || ||||| || | || ||| | | | | | ||||| || Sbjct 207095 ATCGGTGCAACAAGCAGTGAATTACGAACACCGGACTGCAGCACCTTTTGCCTGAGTTCC 207036 Query 244259 TTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGC 244318 | ||| | ||| ||| ||| || | || |||| | ||||||| ||||||||| | Sbjct 207035 TCCCAATTCCAACGGCC--AGATGT--TGGC-TTTGTG-CCCCACAAGTCAAACTGGAAT 206982 Query 244319 AGCCCCTTGCTGACG-GGGCT-GCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCA 244376 || |||| |||| |||| ||| ||| ||| || || || || || || | Sbjct 206981 AGACCCTG--TGACATGGGCGAGCCAATGTACGTCTCATACGGCCCATCATGCGACGCAA 206924 Query 244377 GCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGT 244436 | | ||||| | | | || ||| ||||| |||||||| || |||||| | | Sbjct 206923 GTTGGCAGCTGGCCGCAACAGCATGGTAATAGATCGTCTCGAATATGTCCTTGTTTAGCT 206864 Query 244437 CGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCT 244496 | || |||| ||| ||| || || | ||||| |||||| || ||||| || | Sbjct 206863 CCCGCGCCTCTTCGCTCTCGAATGGCATACGCATCAAAATGAAGGTATCCGCCAGCCCTT 206804 Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGT 244556 | || ||||| || || || | ||| | | |||||| | | |||| || || |||| Sbjct 206803 GGACTCCGATACCTATCGGACGGTGCCTCAAGTTGGACCTCTTGGCCTCCTCAACCGGGT 206744 Query 244557 AAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCA 244616 |||||||| ||| || | |||||| | ||| ||| | ||| | || | || ||| Sbjct 206743 AAAAGTTGATGTCAATTATCTTGTTCAAATTGTTGGTTACCATTCTCACAATCTCCCCCA 206684 Query 244617 GCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCG--ATGGT--GATCCTC--ACAAACT 244670 || ||||| ||||||| | ||| | || || || ||| ||||| | Sbjct 206683 AT-GC-----GTCGTGGTCGTAGGTAGGGGCGGAGCCATCGTCAGAAACTCGAACAAATT 206630 Query 244671 CGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGA 244730 |||||| || | | ||||| ||||| ||||| ||||| || | |||||| | | Sbjct 206629 TGTTGAGTGCAATGGAGGCCAAATTGCACACGGCAACCTCATCGGGTGAGGTGTATTCAA 206570 Query 244731 CAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGG 244790 |||||| || || | || ||| ||||| || |||| ||| || ||| ||| Sbjct 206569 TAATCTCAGTACACAAATTTGAGCAACGAATGGTACCGAGGTTCTGCTGGTTGCTCTTCC 206510 Query 244791 CGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA 244850 ||| |||| ||||| ||||||||| | || |||||||| | ||| || | | | Sbjct 206509 TGTTACAGGAATCCTTATAGAGCATGTATGGGGTTCCGGTCTCAATCTGCGCCTCCAAAA 206450 Query 244851 CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTC-----TGCCTC 244905 || ||| | | | || | | | | ||| |||||| | | | ||| Sbjct 206449 TAGCGTACCAAACCTTTCGCGCATCAATCTT--TGC---CCTTGCTCGCCCTTGTTTCTC 206395 Query 244906 GTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGA 244965 ||| |||| || |||| || ||| || | || || | || ||||| | Sbjct 206394 GTATTTCATGTAGAGCTCCTCAAATTCGTCACCATAAACATCAGCCAGACCGGGTGCCTC 206335 Query 244966 CGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGG 245025 ||| || | ||| ||| | |||| |||||| | ||| || | || || Sbjct 206334 ATTCGGACAGAAGAGGGACCATGAAGCATTTTCCTCGACCCTTTTCATAAACAAATCTGG 206275 Query 245026 GATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCT 245085 |||||||| | | |||||| ||||| | | |||||| ||| |||| ||||||| Sbjct 206274 AATCCAGAGTCCATAGAAGAGATCCCTTGCACGCTGCTC-TCCTTGCCATGATTCTTCCG 206216 Query 245086 CAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCC 245145 || || | || || | | ||| | ||||||||||||| ||||| || | |||||| Sbjct 206215 CAAGTCTAGGAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAAAGGCGCC 206156 Query 245146 GGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGT 245205 ||||| ||| ||||| || || ||| || | ||| | | | || | Sbjct 206155 CTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCCTGAGCAT 206096 Query 245206 AGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAG 245265 ||| || || || || || || |||||||| || |||| | ||||||||| Sbjct 206095 AGGGACAATTCCATTGGAAGTACCATTGGTGCCTCGAATATAGGACCGAGTGCCCCTGAT 206036 Query 245266 GTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGAT 245325 |||| || || | ||| | |||||||| ||| || |||| ||| || | || | Sbjct 206035 GTTGTGGACGGCGAGGCCGATACCGCCGGCAGACTTTGAAATGACGGCACAACGTTTCA- 205977 Query 245326 GGTGTC 245331 |||||| Sbjct 205976 GGTGTC 205971 >seq864 Length=1598700 Score = 123 bits (136), Expect = 5e-23 Identities = 625/997 (63%), Gaps = 14/997 (1%) Strand=Plus/Plus Query 244402 GTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGG 244461 ||| ||||| |||||||| || |||||| | || || |||| ||| ||| || Sbjct 468851 GTAATAGATCGTCTCGAATATGTCCTTGTTTAGCTCCCGCGCCTCTTCGCTCTCGAATGG 468910 Query 244462 GATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTG 244521 || | ||||| |||||| || ||||| || || || ||||| || || || | ||| Sbjct 468911 CATACGCATCAAAATGAAGGTATCCGCCAGCCCTTGGACTCCGATACCTATCGGACGGTG 468970 Query 244522 TCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTT 244581 | | |||||| | | |||| || || |||||||||||| ||| || | |||||| Sbjct 468971 CCTCAAGTTGGACCTCTTGGCCTCCTCAACCGGGTAAAAGTTGATGTCAATTATCTTGTT 469030 Query 244582 GAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGG 244641 | ||| ||| | ||| | || | || ||| || ||||| ||||||| Sbjct 469031 CAAATTGTTGGTTACCATTCTCACAATCTCCCCCAAT-GC-----GTCGTGGTCGTAGGT 469084 Query 244642 ATCCTCGG--CGATGGT--GATCCTC--ACAAACTCGTTGAGGGCGACGCTGGCCAGGTT 244695 | ||| | || | || || ||||| | |||||| || | | ||||| || Sbjct 469085 AGGGGCGGANCCATCGNCAGAAANTCGAACAAATTTGTTGAGTGCAATGGAGGCCAANTT 469144 Query 244696 GCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCA 244755 ||| ||||| ||||| || | |||||| | | |||||| || || | || ||| Sbjct 469145 GCACACGGCAACCTCATCGGGTGAGGTGTATTCAATAATCTCAGTACACAAATTNGAGCA 469204 Query 244756 CTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCAT 244815 ||||| || |||| ||| || ||| ||| ||| |||| ||||| || ||||| Sbjct 469205 ACGAATGGTACCGAGGTTCTGCTGGTTGCTCTTCCTGTTACAGGAATCCTTATANAGCAT 469264 Query 244816 GAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTT 244875 | | || |||||||| | ||| || | | | || ||| | | | || | Sbjct 469265 GTATGGGGTTCCGGTCTCAATCTGCGCCTCCAAAATAGCGTACCAAACCTTNCGCGCNTC 469324 Query 244876 GACCGTCCTGCGAGCCTTGCCCTC-TGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGG 244934 | | | | || | ||||| | |||||| |||| || |||| || ||| Sbjct 469325 AATCTTNGCCCTTGC-TCGCCCTTGTTTCTCGTATTTCATGTANAGCTCCTCAAATTCGN 469383 Query 244935 GGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGC 244994 || | || || | || ||||| | ||| || | ||| ||| | Sbjct 469384 CACCATAAACATCAGCCAGACCGGGTGCCTCATTCGGACAGAAGAGGGACCATGAANCAT 469443 Query 244995 CGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGG 245054 |||| ||||| | ||| || | || || |||||||| | | |||||| ||||| | Sbjct 469444 TTTCCTCNACCCTTTTCATAAACAAATCNGGAATCCAGAGNCCATAGAAGAGATCCCTTG 469503 Query 245055 TCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGT 245114 | |||||| ||| |||| ||||||| || || | || || | | ||| | | Sbjct 469504 CACGCTGCTCTTCCTTGCCATGATTCTTCCNCAAGTCTAGNAAATCGAGAATGTCTGCAT 469563 Query 245115 GCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCA 245174 |||||||||||| ||||| || | |||||| ||||| ||| ||||| || || Sbjct 469564 GCCAGGGCTCCAAGTAGATTGCAAAGGCGCCCTTACGCTTCCCGCCGCCCTGATCAACAT 469623 Query 245175 TCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGG 245234 ||| || | ||| | | | || | || || || || || || || |||| Sbjct 469624 ACCTGGCGGTGTCATTGTACACCCTNAGCATNGGGACAATTCCATTGGAAGTACCATTGG 469683 Query 245235 TGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGG 245294 |||| || |||| | ||||||||| |||| || || | ||| | ||||||| Sbjct 469684 TGCCTCGAATATAGGACCGAGTGCCCCTGATGTTGTGGACGGCGAGGCCGATACCGCCGG 469743 Query 245295 CGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCG 245354 | ||| || |||| ||| || | || | ||||| ||||| || || || Sbjct 469744 CAGACTTTGAAATGACGGCACANCGNTTCANNGTGTCGTAAATGCCTTCGATAGAATCAT 469803 Query 245355 ACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGG 245391 |||| |||| | |||||| |||||||| || Sbjct 469804 CAGTCATAGTGAGTAAAAAGCAACTNGACAGCTGAGG 469840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944325943838480