Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq475 98.7 8e-16 seq99 95.1 1e-14 seq492 93.3 3e-14 seq557 89.7 4e-13 >seq475 Length=1546706 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| || ||||||| ||| || || |||||| || ||||| ||||| | | Sbjct 934394 CCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTTTGGATGTTATAATCCGAC 934453 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| ||||| ||||||||||| |||||||| ||||| ||||| || ||| || Sbjct 934454 AAGGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGA 934513 Query 34021 ACGCTCTCTTTGTC 34034 | || ||| ||||| Sbjct 934514 ATGCCCTCCTTGTC 934527 >seq99 Length=379092 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| || ||||||| ||| || || |||||| || ||||||||||| | | Sbjct 173858 CCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTCCTT-TGGATGTTGTAATC-GAC 173915 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| ||||| ||||||||||| |||||||| ||||| ||||| || ||| || Sbjct 173916 AAGGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGA 173975 Query 34021 ACGCTCTCTTTGTC 34034 | || ||| ||||| Sbjct 173976 ATGCCCTCCTTGTC 173989 >seq492 Length=1085467 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || || ||||| ||||| ||| |||||||||||||||||| || | Sbjct 148054 CCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 148113 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| || | |||||||| || || || || |||||||| ||| || Sbjct 148114 AACGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGG 148173 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCA 34079 | || || |||||| ||||| ||| | | |||| | | || | || ||| Sbjct 148174 ATGCCTTCCTTGTCCTGGATTTTGGTCTTGA-CGTTCTCAATCGTGTCCGAGGACTCGAC 148232 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || |||||||| || || || || ||||||||||| ||||| Sbjct 148233 CTCGAGTGTGATTGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 148280 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| || || || ||||| ||||| ||| |||||||||||||||||| || | Sbjct 148282 CCACCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 148341 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| || | |||||||| || || || || |||||||| ||| || Sbjct 148342 AACGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGG 148401 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCA 34079 | || || |||||| ||||| ||| | | |||| | | || | || ||| Sbjct 148402 ATGCCTTCCTTGTCCTGGATTTTGGTCTTGA-CGTTCTCAATCGTGTCCGAGGACTCGAC 148460 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || |||||||| || || || || ||||||||||| ||||| Sbjct 148461 CTCGAGTGTGATTGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 148508 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| || || || ||||| ||||| ||| |||||||||||||||||| || | Sbjct 148510 CCACCTCGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 148569 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| || | |||||||| || || || || |||||||| ||| || Sbjct 148570 AACGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGG 148629 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCA 34079 | || || |||||| ||||| ||| | | |||| | | || | || ||| Sbjct 148630 ATGCCTTCCTTGTCCTGGATTTTGGTCTTGA-CGTTCTCAATCGTGTCCGAGGACTCGAC 148688 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || |||||||| || || || || ||||||||||| ||||| Sbjct 148689 CTCGAGTGTGATTGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 148736 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||||||||||||| | || ||| |||||||||||||| || ||| || Sbjct 147379 AGGCGCAGCACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAAGGTACGA 147438 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||||| || || ||||| |||||||| || || | | ||| Sbjct 147439 CCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCC 147498 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| ||| || ||| | | ||| | |||| | || || ||| | ||| Sbjct 147499 TTGTCCTGAATCTTAGTCTTCA-CGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGT 147557 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| |||||||| || | ||| |||||||| || ||||| Sbjct 147558 TATAGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147596 >seq557 Length=252103 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || || ||||| ||||| ||| |||||||||||||||||| || | Sbjct 155194 CCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 155135 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || || |||| || | ||||||||||| || |||||||||||||||||| Sbjct 155134 AAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCC 155081 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| || || || |||| ||||| ||| |||||||||||||||||| || | Sbjct 154968 CCACCTCGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 154909 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || |||| || | |||||||| || || || || |||||||| || || Sbjct 154908 AAGGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTC--GGGGG 154851 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCA 34079 | || || |||||| ||||| ||| | | |||| | | || | || ||| Sbjct 154850 ATGCCTTCCTTGTCCTGGATTTTGGTCTTGA-CGTTCTCAATCGTGTCTGAGGACTCGAC 154792 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || |||||||| || || || || ||||||||||| ||||| Sbjct 154791 CTCGAGTGTGATTGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 154744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397056965580646