Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq591 102 2e-16 seq523 86.0 1e-11 >seq591 Length=826125 Score = 102 bits (112), Expect = 2e-16 Identities = 248/367 (68%), Gaps = 9/367 (2%) Strand=Plus/Plus Query 333628 CCTTCGAAGTGATACCCTCGAGGA-ACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTC 333686 |||| || ||||||||||| ||| |||||| ||||| || || || || ||| ||| Sbjct 36795 CCTTTGATGTGATACCCTCAAGGTTACCCGGTTTCGGG-AATTTGAACTTGAGCTTGGTC 36853 Query 333687 TCGGTAAGGGCGTAGTAACTCGCTGA-TTCGGGACGCTTCTTCACGAACTCGGACAGATT 333745 | | | || |||| || ||||| || |||||| || ||||| | || ||| Sbjct 36854 TGCTTCATTTCGAAGTAGGATTTTGCCTTCGGAAC-CTTCTTTACAAACTCTGTCAAATT 36912 Query 333746 TCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGC 333805 ||||| | | ||||| || || || ||| |||||||| ||| || ||| Sbjct 36913 GCCCTTATGCAACTTCAATTTGAGATT---TTCAATCTGGATAATGTGGGTACACACATT 36969 Query 333806 GTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAG 333865 || | | || |||||||||||| | | || || ||||| || | | | ||| Sbjct 36970 GTTCAAAAGTCCCTTGTCGTGTGACACGACAATGCTCGTCACGTCTTTCAAGCCGTTCAA 37029 Query 333866 GTATTCAATCAGCCACCTCACGTTAGAC-ACAGAAAGATGGTTGGTCGGCTCGTCAAGAA 333924 ||| || | |||| ||||||| ||| ||| | ||||||||||||||| ||||| | Sbjct 37030 GTAATCTTCAACCCACTTCACGTT-GACGACATCCAAATGGTTGGTCGGCTCATCAAGCA 37088 Query 333925 GTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTC 333984 || | | ||| || | ||||| ||||| || |||||||| ||||| ||| || | Sbjct 37089 AGAGGATATCTGCATTTTGAAGCATAGCACGAGCTAGAGCGAGCTTCATACGCCATCCAC 37148 Query 333985 CTGAAAG 333991 | ||||| Sbjct 37149 CCGAAAG 37155 >seq523 Length=1527182 Score = 86.0 bits (94), Expect = 1e-11 Identities = 283/436 (65%), Gaps = 8/436 (2%) Strand=Plus/Plus Query 297278 GACCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACA 297337 |||||||| ||||| || || || |||||||| | || | ||||| ||||| Sbjct 3667 GACCAACCCGTACCAATCCCGTCAGAGCCATTCACTAAAACCAT-GGAATTACAGGGCAG 3725 Query 297338 TAATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCC 297397 || | || || || ||| | || || || | ||| || |||| || | ||||||| Sbjct 3726 TACCATTCAGGCTCAATCATCATTCCATCTTCTTCCAGGTACTTCAAAACAGGATCGTCC 3785 Query 297398 GTATCGACGAAAACCTGTCGAGTCTGAGGGTT--CAGTTTTGTGAAAATATATCGTGCAC 297455 ||| ||| | ||| || || || | || |||||||| || || | | | Sbjct 3786 AGCTCGGAGAATAGTGCTCGTGT--GATGGGTGCCAACTTTGTGAAGATGTACCTAGAAG 3843 Query 297456 TCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGT 297515 || || || || || |||| | | || ||||| || | || | | | ||| Sbjct 3844 ATGCTGCGTCTTTTCCGCCTTGCAGGCGAGTTCCAAACTGACCAGCGGGGACTAGCAAGT 3903 Query 297516 TGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATG 297575 | ||||||| ||||| | | ||||||||| || |||||| || || || Sbjct 3904 TTGCGTTATTGGAACCGACGAAGTTCTGTGCAAGACCGACAATGGTCGACTGAAGCGACA 3963 Query 297576 CTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCA 297635 |||||||||||| || ||| ||| || || ||||| || || ||| |||||||| | Sbjct 3964 TTTCGCCATGGTGGTACGCGGCATGTTCAGCGACGTACCCAGCGAGCTGAGCAACCTTGA 4023 Query 297636 CGTCGG---TCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTT 297692 || | ||| | || |||||||| || | | | |||||| ||||| ||||| | Sbjct 4024 TATCTGATCGCGTTAGCTTTCGCTTGAAGCATGCAAAGAGCACTTTGCGTTGGGAAGGCT 4083 Query 297693 TGAAACCATCAACGAC 297708 | || |||||||| || Sbjct 4084 TCAACCCATCAACTAC 4099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102864131280050