Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq932 163 3e-35 seq864 154 2e-32 seq251 141 1e-28 seq33 120 4e-22 seq827 105 8e-18 seq489 96.9 4e-15 seq28 96.9 4e-15 >seq932 Length=795108 Score = 163 bits (180), Expect = 3e-35 Identities = 393/589 (67%), Gaps = 8/589 (1%) Strand=Plus/Minus Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 ||||| || ||||| || |||||||||||||| | |||||| || | ||||| || Sbjct 206579 GTGTATTCAATAATCTCAGTACACAAATTTGAGCAACGAATGGTACCGAGGTTCTGCTGG 206520 Query 114572 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 || ||| ||||||| | |||||| || ||||||||||| || || ||||| | || Sbjct 206519 TTGCTCTTCCTGTTACAGGAATCCTTATAGAGCATGTATGGGGTTCCGGTCTCAATCTGC 206460 Query 114632 GACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTC 114690 | || | |||||| | ||| | | | ||| | | || | || |||||||| | Sbjct 206459 GCCTCCAAAATAGCGTACCAAACCTTTCGCGCATCAATCTTTGCCCTT-GCTCGCCCTTG 206401 Query 114691 CTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 114750 | |||||| || ||||||| | ||||| || ||||| | || | || || || Sbjct 206400 TTTCTCGTATTTCATGTAGAGCTCCTCAAATTCGTCACCATAAACATCAGCCAGACCGGG 206341 Query 114751 TGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAG 114810 ||||| || || |||||||| |||||| | || ||||| || | ||||| || | Sbjct 206340 TGCCTCATTCGGACAGAAGAGGGACCATGAAGCATTTTCCTCGACCCTTTTCATAAACAA 206281 Query 114811 GTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCT-TCATCCCCCTGAT 114869 ||||| |||||||| | |||||||||||| || ||| || || | || |||| Sbjct 206280 ATCTGGAATCCAGAGTCCATAGAAGAGATCCC--TTGCACGCTGCTCTCCTTGCCATGAT 206223 Query 114870 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 114929 | ||||| || | || || | || || || ||||| || |||| ||| | || | Sbjct 206222 TCTTCCGCAAGTCTAGGAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAA 206163 Query 114930 TTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGC 114986 | |||||||| | || |||| | |||||||| || ||| |||| | || | Sbjct 206162 AGGCGCCCTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCC 206103 Query 114987 GAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGG 115046 ||||| || | || |||| || ||||| || || |||||| ||| | || Sbjct 206102 TGAGCATAGGGACAATTCCATTGGAAGTACCATTGGTGCCTCGAATATAGGACCGAGTGC 206043 Query 115047 CTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGAT 115095 | |||| | |||| | | || ||||| || || ||||||| || Sbjct 206042 CCCTGATGTTGTGGACGGCGAGGCCGATACCGCCGGCAGACTTTGAAAT 205994 >seq864 Length=1598700 Score = 154 bits (170), Expect = 2e-32 Identities = 386/589 (66%), Gaps = 7/589 (1%) Strand=Plus/Plus Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 ||||| || ||||| || ||||||||||| || | |||||| || | ||||| || Sbjct 469170 GTGTATTCAATAATCTCAGTACACAAATTNGAGCAACGAATGGTACCGAGGTTCTGCTGG 469229 Query 114572 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 || ||| ||||||| | |||||| || ||||||||||| || || ||||| | || Sbjct 469230 TTGCTCTTCCTGTTACAGGAATCCTTATANAGCATGTATGGGGTTCCGGTCTCAATCTGC 469289 Query 114632 GACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCC 114691 | || | |||||| | ||| || | || | | || | |||||||| | Sbjct 469290 GCCTCCAAAATAGCGTACCAAACCTTNCGCGCNTCAATCTTNGCCCTTGCTCGCCCTTGT 469349 Query 114692 TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGT 114751 | |||||| || |||| || | ||||| || |||| | || | || || ||| Sbjct 469350 TTCTCGTATTTCATGTANAGCTCCTCAAATTCGNCACCATAAACATCAGCCAGACCGGGT 469409 Query 114752 GCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGG 114811 |||| || || |||||||| |||||| | || ||||| || | ||||| || | Sbjct 469410 GCCTCATTCGGACAGAAGAGGGACCATGAANCATTTTCCTCNACCCTTTTCATAAACAAA 469469 Query 114812 TCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGAT 114869 || || |||||||| | |||||||||||| || ||| ||||| | || |||| Sbjct 469470 TCNGGAATCCAGAGNCCATAGAAGAGATCCC--TTGCACGCTGCTCTTCCTTGCCATGAT 469527 Query 114870 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 114929 | | ||| || | || || | || || || ||||| || |||| ||| | || | Sbjct 469528 TCTTCCNCAAGTCTAGNAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAA 469587 Query 114930 TTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGC 114986 | |||||||| | || |||| | |||||||| || ||| |||| | || | Sbjct 469588 AGGCGCCCTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCC 469647 Query 114987 GAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGG 115046 ||||| || | || |||| || ||||| || || |||||| ||| | || Sbjct 469648 TNAGCATNGGGACAATTCCATTGGAAGTACCATTGGTGCCTCGAATATAGGACCGAGTGC 469707 Query 115047 CTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGAT 115095 | |||| | |||| | | || ||||| || || ||||||| || Sbjct 469708 CCCTGATGTTGTGGACGGCGAGGCCGATACCGCCGGCAGACTTTGAAAT 469756 >seq251 Length=68518 Score = 141 bits (156), Expect = 1e-28 Identities = 270/384 (70%), Gaps = 14/384 (4%) Strand=Plus/Minus Query 10774 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 10833 ||| ||||||| ||| ||||| ||||||||||| || || ||| |||||| | |||| Sbjct 40037 CACCGTGATCTGACGGTCAAAACGACCTGGGCGCAGAAGCGCGGGGTCAAGCACATCAGG 39978 Query 10834 GCGGTTCGTCGCCGCGATGACAACGATGCCCGTC--TCGTTATCAAAGCCATCCATCTCA 10891 |||| ||||||||||| | || | ||| || ||| ||||| |||||||||||| Sbjct 39977 ACGGTG-GTCGCCGCGATAATAATCACGCCT-TCATTCGCC-TCAAAACCATCCATCTCA 39921 Query 10892 GTCAAGA-GTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGCATACCACCCGCA 10948 ||||| | || || | ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 39920 A-CAAGAAGCTGGTTCAGCGTTTGCTCGCGCTCATCGTTACCGCCGCCAA--CACCGGCA 39864 Query 10949 CTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCA 11008 | || || ||| || || || || ||||||||||| | || |||||| ||| | Sbjct 39863 CCCCGGTGACGACCCACAGCATCGATCTCATCGATGAAGATAATGCACGGTGAATTCTTT 39804 Query 11009 CGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACA 11068 | | | ||||| || || ||||| | ||||||||||||||| |||||||| || Sbjct 39803 TTGCCTGC-TCAAACATGTCGCGGACCCGTGAGGCACCGACACCCACGAACATTTCAACG 39745 Query 11069 AAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGC 11127 || | | ||| | || | || || || || |||| ||||| || | || ||||| Sbjct 39744 AAGTCAGAACCGG-AGATGGTGAAAAACGGCACATTGGCCTCACCAGCCACAGCGCGGGC 39686 Query 11128 GAGGAGGGTCTTCCCCGTCCCAGG 11151 || || || || || ||||| || Sbjct 39685 GATCAGTGTTTTACCAGTCCCCGG 39662 >seq33 Length=841369 Score = 120 bits (132), Expect = 4e-22 Identities = 202/290 (70%), Gaps = 13/290 (4%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 ||||| ||||||||||| || || | || | |||||| | ||| ||||| || || Sbjct 175088 CGATCGAAGCGACCTGGACGCAGCAAAGCCTGGTCAAGAACATCCGCACGGTTTGTGGCA 175029 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 || ||||||| || || | | | ||||| || |||||||||||||| | ||| || Sbjct 175028 GCTATGACAATGACACCAGAGTTGCCTTCAAACCCGTCCATCTCAGTCAACATTTGGTTC 174969 Query 10907 ATGGTTTGTTCGCGTTCATCATT---CGCGGGCATACCACCCGCACTGCGTTGCTTACCG 10963 | || ||||| || |||||||| | | | || ||| |||| | ||| ||| Sbjct 174968 AGAGTCTGTTCACGCTCATCATTACCCCCAGCAATTCCA---GCACCCCTCTGCCGTCCG 174912 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACG---GTTGATTTTCACGGGCAACTTCA 11020 || || ||||| ||||| ||||||||||| || | ||| ||||| || | | Sbjct 174911 ACAGCATCAATCTCATCAATGAAAACGATGCAGGAGCGTTCTTTTTCGCGTTC----GCG 174856 Query 11021 AAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 |||| || ||||||| ||||| ||||| |||||||||||||| || Sbjct 174855 AAGAGGTCCCGGACTCGAGAAGCACCCACACCAACAAACATTTCCACGAA 174806 >seq827 Length=2024298 Score = 105 bits (116), Expect = 8e-18 Identities = 199/290 (69%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 ||||| ||||||||||| || || | || | |||||| | ||| ||||| || || Sbjct 1044409 CGATCGAAGCGACCTGGACGCAGCAAAGCCTGGTCAAGAACATCCGCACGGTTTGTAGCA 1044350 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 || ||||||| || || | | | |||||||| |||||||||||||| | || || Sbjct 1044349 GCTATGACAATGACACCAGAGTTGCCTTCAAAGCCGTCCATCTCAGTCAACATCTGGTTC 1044290 Query 10907 ATGGTTTGTTCGCGTTCATCATT--CGCGGGCATACCACCCGCACTGCGTTGCTTACCGA 10964 | || ||||| || ||||| || | | || | || |||| | ||| |||| Sbjct 1044289 AGAGTCTGTTCACGCTCATCGTTACCCCCAGC--AATTCCGGCACCCCTCTGCCGTCCGA 1044232 Query 10965 CGGCGTCAATTTCATCGATGAAAACGATACACG----GTTGATTTTCACGGGCAACTTCA 11020 | || ||||| ||||| ||||||||||| || | ||| ||||| || | | Sbjct 1044231 CAGCATCAATCTCATCAATGAAAACGATGCAAGGAGCGTTCTTTTTCGCGTTC----GCG 1044176 Query 11021 AAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 |||| || ||||||| ||||| || || |||||||||||||| || Sbjct 1044175 AAGAGGTCCCGGACTCGGGAAGCACCTACGCCAACAAACATTTCCACGAA 1044126 >seq489 Length=1032923 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 ||||| ||||| ||||| | ||| ||||| || | ||| | ||| | || || ||| Sbjct 355074 CCCTCATCACGTGAGATCAATTCGTTCGAAAACGTTAATCCAGACATCAACCCGCGTTTC 355015 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 ||||| |||||||||||||||| || || |||||||| || ||||||||| || ||| Sbjct 355014 TTCAAGTAGAAAATCGCACAAAACGACCCTGAGAAGAAAATCCCCTCCACAGCTGCAAAC 354955 Query 126185 GCAAAGAGACGCTCAGCAAAG 126205 || | | ||||| |||||| Sbjct 354954 GCCACCAATCGCTCCGCAAAG 354934 >seq28 Length=612614 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 ||||| ||||| ||||| | ||| ||||| || | ||| | ||| | || || ||| Sbjct 279225 CCCTCATCACGTGAGATCAATTCGTTCGAAAACGTTAATCCAGACATCAACCCGCGTTTC 279284 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 ||||| |||||||||||||||| || || |||||||| || ||||||||| || ||| Sbjct 279285 TTCAAGTAGAAAATCGCACAAAACGACCCTGAGAAGAAAATCCCCTCCACAGCTGCAAAC 279344 Query 126185 GCAAAGAGACGCTCAGCAAAG 126205 || | | ||||| |||||| Sbjct 279345 GCCACCAATCGCTCCGCAAAG 279365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597345214648840