Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq557 127 2e-24 seq492 122 9e-23 >seq557 Length=252103 Score = 127 bits (140), Expect = 2e-24 Identities = 165/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | ||| | ||||| || | ||| |||||| ||||| ||||| ||| | Sbjct 154968 CCACCTCGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 154909 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || |||| || |||||||| || ||||| || || ||||||||||||| || Sbjct 154908 AAGGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCGG--GGG 154851 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| |||||| |||| || | | |||||| || || || Sbjct 154850 ATGCCTTCCTTGTCCTGGATTTTGGTCTTGACGTTCTCAATCGTGTCTGAGGACTCGACC 154791 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| ||||||||||| || ||||| |||||||| ||||| Sbjct 154790 TCGAGTGTGATTGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 154744 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| || | |||||| || ||| || || |||||||| ||| || || || | Sbjct 156093 CGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGGTTCGGCCA 156034 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| |||||||| || | ||||||||||||| || | | |||||| Sbjct 156033 TCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTA 155974 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || | | | | |||||| ||||||||| || | ||| || Sbjct 155973 TCCTGGATCTTGGTCTTCACATTTTCAATCGTGTCCGACGATTCCACCTCAAGCGTAATC 155914 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || ||||| |||||||| ||||| || ||||| Sbjct 155913 GTCTTACCCGTAAGCGTCTTCACAAAAATCTGCAT 155879 Score = 82.4 bits (90), Expect = 8e-11 Identities = 134/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| || ||| || | || || |||||||| |||||||| Sbjct 156524 CTCCTTCTGGATGTTGTAATCGCTCAAAGTACGACCATCCTCAAGCTGCTTGCCAGCGAA 156465 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||||| || | | |||||||||| ||| || || | | Sbjct 156464 AATCAGACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTTGGTCTTCACATT 156405 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || || || || | ||| || || || || || | |||||| || Sbjct 156404 TTCAATCGTGTCCGATGACTCAACTTCAAGCGTAATAGTCTT-CCAGTCAACGTCTTAAC 156346 Query 42197 AAAGATTTGCAT 42208 || || ||||| Sbjct 156345 GAAAATCTGCAT 156334 >seq492 Length=1085467 Score = 122 bits (134), Expect = 9e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| ||| || || || |||| || |||||||| || ||||| Sbjct 148089 CTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAA 148148 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||||||| |||||| |||| | Sbjct 148149 GATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATTTTGGTCTTGACGTT 148208 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| || || || |||| ||||| ||||||||||| || ||||| || Sbjct 148209 CTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTTGCCCGTGAGGGTCTTCAC 148268 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 148269 AAAGATCTGCAT 148280 Score = 122 bits (134), Expect = 9e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| ||| || || || |||| || |||||||| || ||||| Sbjct 148317 CTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAA 148376 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||||||| |||||| |||| | Sbjct 148377 GATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATTTTGGTCTTGACGTT 148436 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| || || || |||| ||||| ||||||||||| || ||||| || Sbjct 148437 CTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTTGCCCGTGAGGGTCTTCAC 148496 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 148497 AAAGATCTGCAT 148508 Score = 122 bits (134), Expect = 9e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| ||| || || || |||| || |||||||| || ||||| Sbjct 148545 CTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAA 148604 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||||||||| |||||| |||| | Sbjct 148605 GATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATTTTGGTCTTGACGTT 148664 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| || || || |||| ||||| ||||||||||| || ||||| || Sbjct 148665 CTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTTGCCCGTGAGGGTCTTCAC 148724 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 148725 AAAGATCTGCAT 148736 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||||||||||| ||||||||| ||| || ||||| ||||| ||| Sbjct 147825 ACCACCTCGAAGACGCAACACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACT 147884 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || |||| || |||||||| |||||||| || || |||||||| |||| || Sbjct 147885 CAAAGTACGTCCGTCCTCAAGCTGCTTCCCAGCGAAAATCAGACGCTGCTGATCGGGAGG 147944 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | |||||||||| ||| | || || || | || | | ||||| || || | Sbjct 147945 AATACCCTCCTTGTCC-TGAATCTTCGTCTTAACATTCTCGATTGTGTCCGAGGACTCAA 148003 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||| || || || || || | ||||| ||||| || ||||| Sbjct 148004 CTTCAAGCGTAATCGTCTTTCCTGTCAAAGTCTTCACAAAAATCTGCAT 148052 Score = 104 bits (114), Expect = 3e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| ||||||||| ||| || ||||| ||||| ||| || || || | Sbjct 147382 CGCAGCACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAAGGTACGACCA 147441 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| |||||||| || || ||||||||||||| || | | ||||||| Sbjct 147442 TCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTG 147501 Query 42114 TCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| | || || || | || | | || || || || || || | ||| || Sbjct 147502 TCC-TGAATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTTAT 147560 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || | ||||| ||||| || ||||| Sbjct 147561 AGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147596 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| ||||||||| ||| || || || ||||| ||| || || || || Sbjct 147610 CGCAGCACCAGATGCAATGTAGACTCTTTCTGGATGTTGTAGTCACTCAAGGTACGTCCG 147669 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| |||||||| ||||| ||||||||||||| || | | ||||||| Sbjct 147670 TCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTG 147729 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || | || | | || || || || || || | ||| || Sbjct 147730 TCCTGGATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTAATC 147789 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || | ||||| ||||| || ||||| Sbjct 147790 GTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147824 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| || || || | || || |||||||| |||||||| Sbjct 146949 CTCCTTCTGGATGTTGTAATCGCTCAAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAA 147008 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||||| || | | |||||||||| ||| || || | | Sbjct 147009 AATCAGACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTTGGTCTTCACATT 147068 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| ||| ||||| || | ||| || || || ||||| |||||||| || Sbjct 147069 TTCAATGGTGTCCGACGACTCCACCTCAAGCGTAATCGTCTTACCCGTAAGCGTCTTCAC 147128 Query 42197 AAAGATTTGCAT 42208 ||| || ||||| Sbjct 147129 AAAAATCTGCAT 147140 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| ||| ||| || || || ||||| || || || || | || || Sbjct 147159 CACCAAGTGCAGTGTAGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTACGACCATCCTC 147218 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| |||||||| || || ||||||||||||| || | | |||||||||| | Sbjct 147219 AAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCC-T 147277 Query 42119 GATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || |||| || || | || | | ||| || || || || || | ||| || |||| Sbjct 147278 GAATTTTCGTCTTCACATTCTCTATCGTATCCGATGACTCAACTTCAAGCGTAATCGTTT 147337 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | ||||| ||||| || ||||| Sbjct 147338 TTCCAGTCAATGTCTTCACAAAAATCTGCAT 147368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543205174650320