Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq557 122 9e-23 seq492 118 1e-21 >seq557 Length=252103 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || ||||| ||||||||||| || | || || |||| Sbjct 155634 AGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCC 155575 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||||||||| |||| || |||||||| ||||||||||| || || || || Sbjct 155574 TCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCC 155515 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||| | || ||||| | ||| | ||| Sbjct 155514 TGGATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACTTCAAGAGTAATAGTC 155455 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| || || |||||||| ||||| Sbjct 155454 TTTCCAGTCAATGTCTTCACGAAAATCTGCAT 155423 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || ||||| ||||||||||| || | || || |||| Sbjct 155862 AGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCC 155803 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||||||||| |||| || |||||||| ||||||||||| || || || || Sbjct 155802 TCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCC 155743 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||| | || ||||| | || | ||| Sbjct 155742 TGGATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACTTCAAGCGTAATAGTC 155683 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| || || || ||||| ||||| Sbjct 155682 TTTCCAGTCAACGTCTTCACAAAAATCTGCAT 155651 Score = 111 bits (122), Expect = 2e-19 Identities = 162/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||||| | ||||| ||||||| || || || || || ||||||||||| Sbjct 156560 ACCGCCGCGCAGACGGAGCACAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCT 156501 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || |||||||||||||| || |||| || |||||||||||||| || Sbjct 156500 CAAAGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGG 156441 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| ||| || | || || | || || Sbjct 156440 AATACCCTCCTTGTCCTGGATCTTGGTCTTCACATTTTCAATCGTGTCCGATGACTCAAC 156381 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||||| || ||||| || || |||||||| ||||| Sbjct 156380 TTCAAGCGTAATAGTCTT-CCAGTCAACGTCTTAACGAAAATCTGCAT 156334 Score = 105 bits (116), Expect = 7e-18 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || ||||||||||| || | || || |||| Sbjct 155179 AGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCC 155120 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||||||||| | || || |||||||| || | || || ||||| || || Sbjct 155119 TCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCG--GGGATGCCTTCCTTGTCC 155062 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || || || ||||| || | || | ||| Sbjct 155061 TGAATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGACTCCACCTCAAGGGTAATAGTC 155002 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||||||||||||| |||||||| ||||| Sbjct 155001 TTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 154970 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||||||| | || || ||||| || || ||||| || | ||| || | || ||| Sbjct 156315 ACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGGTTCGGCCATCCTCA 156256 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 ||||||||||| || |||| | |||||||||||||||||||| || || || || || Sbjct 156255 AGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGG 156196 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTA-CAGTTACGGTCTT 64413 || || ||| || | | || ||||| | || ||||| | | || | ||||| Sbjct 156195 ATCTTGGTCTTCAC-ATTTTCATCGTATCCGATGACTCAACTTCAAGCGGTAATAGTCTT 156137 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| || || |||||||| ||||| Sbjct 156136 TCCAGTCAACGTCTTAACGAAAATCTGCAT 156107 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | || || || |||| || || || || ||||||||||| || Sbjct 155422 ACCACCGCGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGCT 155363 Query 64276 GACGGTGCGCGC-GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334 | ||| || | ||| ||||||||||| || || | ||||| |||||||| || |||| Sbjct 155362 CAAGGTACGGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGATCCGGAG 155303 Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394 | || || || || || || || || ||| ||| ||| | || || || || | Sbjct 155302 G-ATACCCTCCTTGTCCTGAATCTTCGTCTTAACATTCTCGATAGTGTC-GAGGACTCAA 155245 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||| ||||||||||| || |||||||| ||||| Sbjct 155244 CCTCAAGGGTAATCGTCTTTCCGGTCAAAGTCTTCACGAAAATCTGCAT 155196 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||||||| | || || ||||| || || ||||| || | ||| || | || ||| Sbjct 156087 ACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGGTTCGGCCATCCTCA 156028 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 ||||||||||| || |||| | |||||||||||||||||||| || || || || || Sbjct 156027 AGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGG 155968 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCT 64412 || || ||| ||| || | || | ||| || ||||| || | || | |||| Sbjct 155967 ATCTTGGTCTTCACATTTTCAATCGTGT--CCGACGATTCCACCTCAAGCGTAATCGTCT 155910 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || | || || || ||||| ||||| Sbjct 155909 TACCCGTAAGCGTCTTCACAAAAATCTGCAT 155879 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || || ||||||||||| || | |||||| |||| ||||||||| Sbjct 154944 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAGGTGCGTCCGTCCTCAAGCTGC 154885 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||||| || | || || ||||||||||||| || || ||||| || || || ||||| Sbjct 154884 TTGCCTGCGAAGATAAGACGCTGCTGGTCGG--GGGATGCCTTCCTTGTCCTGGATTTT 154828 >seq492 Length=1085467 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | ||||| ||||| | || || ||||| ||||||||||| || Sbjct 147369 ACCGCCCCGGAGGCGCAGCACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACT 147428 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || |||||||||||||| || |||| || ||||||||||||||||| Sbjct 147429 CAAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGG 147488 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || || || ||| || ||| | ||||| | || || Sbjct 147489 AATTCCCTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAAC 147548 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | |||| || || || ||||| || || || ||||| ||||| Sbjct 147549 TTCAAGCGTTATAGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147596 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | |||||| | || | || || ||||| || |||||||| || Sbjct 147141 ACCGCCCCGGAGGCGAAGCACCAAGTGCAGTGTAGACTCTTTCTGGATGTTGTAGTCGCT 147200 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || |||||||||||||| || |||| || ||||||||||||||||| Sbjct 147201 CAAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGG 147260 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || ||||| ||| ||| ||| | ||||| | || || Sbjct 147261 AATTCCCTCCTTGTCCTGAATTTTCGTCTTCACATTCTCTATCGTATCCGATGACTCAAC 147320 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | || || || ||||| || || || ||||| ||||| Sbjct 147321 TTCAAGCGTAATCGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147368 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||| | || || ||||| ||||||||||| || | || || |||| || Sbjct 147843 CACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGTCCGTCCTC 147902 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||||||| || || |||| || |||||||| ||||||||||| || || || || || Sbjct 147903 AAGCTGCTTCCCAGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTG 147962 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || || ||| ||| ||| | ||| || || || ||||| | || | ||||| Sbjct 147963 AATCTTCGTCTTAACATTCTCGATTGTGTCCGAGGACTCAACTTCAAGCGTAATCGTCTT 148022 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||||||| || || ||||| ||||| Sbjct 148023 TCCTGTCAAAGTCTTCACAAAAATCTGCAT 148052 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || ||||| || |||||||| || | ||| || |||| Sbjct 147613 AGCACCAGATGCAATGTAGACTCTTTCTGGATGTTGTAGTCACTCAAGGTACGTCCGTCC 147672 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| || || | ||||| ||||||||||||||||||||||| || || || Sbjct 147673 TCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCC 147732 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | ||||| | || ||||| | || | || Sbjct 147733 TGGATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTAATCGTT 147792 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| || || || ||||| ||||| Sbjct 147793 TTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147824 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||||| | ||||| || |||| || || || || || ||||||||||| Sbjct 146913 ACCGCCGCGCAGACGGAGCACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCT 146972 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || |||||||||||||| || |||| || |||||||||||||| || Sbjct 146973 CAAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGG 147032 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCC 64393 ||| || || || || || || || ||| ||| || | || | ||| || ||| Sbjct 147033 AATACCCTCCTTGTCCTGGATCTTGGTCTTCACATTTTCAATGGTGT--CCGACGACTCC 147090 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | || | ||||| || || | || || || ||||| ||||| Sbjct 147091 ACCTCAAGCGTAATCGTCTTACCCGTAAGCGTCTTCACAAAAATCTGCAT 147140 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || ||||||||||| || | ||||| |||| Sbjct 148069 AGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCC 148128 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| || | || || ||||||||||| || || || ||||| || || Sbjct 148129 TCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCC 148188 Query 64352 TGTATTTT 64359 || ||||| Sbjct 148189 TGGATTTT 148196 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || ||||||||||| || | ||||| |||| Sbjct 148297 AGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCC 148356 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| || | || || ||||||||||| || || || ||||| || || Sbjct 148357 TCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCC 148416 Query 64352 TGTATTTT 64359 || ||||| Sbjct 148417 TGGATTTT 148424 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || ||||||||||| || | ||||| |||| Sbjct 148525 AGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCC 148584 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| || | || || ||||||||||| || || || ||||| || || Sbjct 148585 TCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCC 148644 Query 64352 TGTATTTT 64359 || ||||| Sbjct 148645 TGGATTTT 148652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499637786236120