Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq160 165 4e-36 seq263 104 1e-17 >seq160 Length=568654 Score = 165 bits (182), Expect = 4e-36 Identities = 460/702 (66%), Gaps = 23/702 (3%) Strand=Plus/Minus Query 65910 ACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGG 65969 || ||| ||||||| || || | ||| |||| ||| || || |||| ||| || || Sbjct 244259 ACGATTTCCACCGGGTCTATCGGTCTAGACGTCGCCCTTGGAGTCGGAGGGATCCCTCGG 244200 Query 65970 GGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCAC 66029 || || || || |||||||| || || || || || || | || || |||||| Sbjct 244199 GGACGTGTCGTCGAGATCTATGGCCCAGAATCCAGCGGTAAAACCACCCTGACGCTCCAC 244140 Query 66030 GCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCT 66089 ||||| || | || || ||| ||| || | |||||| | | ||||||| ||||| || Sbjct 244139 GCGGTAGCTGAGGCGCAAAAGAGCGGCGGGATCGCCGCATTCGTCGACGCTGAACACGCT 244080 Query 66090 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 66149 ||||| | |||||| | ||||||||| ||| ||||| || | |||| Sbjct 244079 CTCGATGTGGCCTACGCCCGGAAGCTCGGGGTTCGCACCGATGATCTCTTGATCTCGCAG 244020 Query 66150 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 66209 || || || || ||||| || || || |||| || | | || || || | | Sbjct 244019 CCGGATACCGGGGAGCAAGCGCTTGAAATCGCAGAGATGTTGGTGCGTTCCAACGCGATC 243960 Query 66210 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 66269 || | || || || || ||||| || || |||||| | || ||| |||||||||| Sbjct 243959 GATATTCTTGTGGTTGATTCGGTGGCTGCGCTTGTGCCGAGAGCTGAGATCGAAGGGGAA 243900 Query 66270 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 66329 || || ||||| ||||||||| |||| || || ||||| || || | || || | Sbjct 243899 ATGGGCGACTCCCACGTCGGCTTGCAGGCTCGATTGATGAGCCAAGCGCTCCGAAAATTA 243840 Query 66330 ACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGG-----GTGAATCAGCTGCGCG 66384 || || | ||||| | | | || | ||||| | || ||| | || Sbjct 243839 ACGGGTATTATTGCGAAGAGCCGGAC-----CTGTGTGGTCTTTATCAACCAGATCCGAT 243785 Query 66385 AGAAGATCGGCAACGTGGGCTACGG----CCCGAATGAGACCACCACCGGTGGTAAGGCT 66440 ||||||||| |||| | ||| |||||| || || || ||||| || || Sbjct 243784 TGAAGATCGG---CGTGATGTTCGGCAGCCCCGAA----ACGACTACGGGTGGCAACGCA 243732 Query 66441 CTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGA-GAAGGAAGG 66499 || || || |||| | |||||||| | || | |||| | ||| ||||| | Sbjct 243731 CTTAAGTTTTATAGCTCGATTCGTATGGACATTCGTCGTATCG-GAGCGATCAAGGACAG 243673 Query 66500 CGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCC 66559 |||| ||| || || || || || || || ||||| |||||||||||| |||| || || Sbjct 243672 CGATAAGGTCGTGGGTAATCGAACCCGGGTTAAGGTGGTCAAGAACAAGTTGGCCCCGCC 243613 Query 66560 GCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCAT 66601 | |||| || |||||| ||| | |||||||| ||||| Sbjct 243612 GTTCCGCGAGCATGAGTTCGATATCATGTACGGCGAAGGCAT 243571 Score = 109 bits (120), Expect = 3e-19 Identities = 191/272 (70%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 66066 GCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGAT 66125 |||| |||||||| |||||| |||||||| | | |||||||| || || || Sbjct 395941 GCCTTTATCGACGCAGAACATGCTCTCGACGTTCATTACGCCGCCAACCTGGGAGTACGG 395882 Query 66126 GTCGACAATCTCGTGGTTGTGCAGCCAGA-CACTGGCGAGCAGGCCCTGGAGATCGTTGA 66184 | || | ||| || || |||||| || ||| ||||||||||| ||||| || || || Sbjct 395881 GCTGAGCAACTCCTGATTTCGCAGCCGGATCAC-GGCGAGCAGGCTCTGGAAATTGTCGA 395823 Query 66185 CCTTCTCGTCAAGTCTGGCGAGGTTTCCAT--CATCGTTGTGGACTCTGTGGCGGCCCTG 66242 | || ||| || || || | | || | ||||| |||| || ||||| ||| || Sbjct 395822 GATCCTGGTCCGATCGGG-GACAAT-CGATGTCCTCGTTCTGGATTCAGTGGCTGCCTTG 395765 Query 66243 GTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGC 66302 ||||| || || ||||||||||| || || || || | || | || |||| ||||| Sbjct 395764 GTGCCCCGTGCCGAGCTCGAAGGAGAAATGGGCGAGGCTCATATGGGTTTGCAAGCCCGT 395705 Query 66303 CTGATGTCTCAGGCCATGCGCAAGCTGACCGG 66334 || ||| || |||||||| || || ||||| Sbjct 395704 CTTATGAGCCAAGCCATGCGAAAACTCACCGG 395673 >seq263 Length=70425 Score = 104 bits (114), Expect = 1e-17 Identities = 426/666 (64%), Gaps = 17/666 (3%) Strand=Plus/Plus Query 65946 CTCGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCA 66005 ||||| || ||||| |||| |||||||| | ||||| || || || || ||| Sbjct 64609 CTCGGAATTGGGGGTCTGCCGAAAGGCCGGGTGATTGAGATTTATGGACCAGAAAGTTCT 64668 Query 66006 GGGAAGTCAACGTTGTGCCTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC 66065 || || ||||| | | | || | || || | || ||||| ||| ||| Sbjct 64669 GGTAAAACAACGCTATCATTACATGTCGTTGCTGAAGCGCAGAAAAGCGGAGGCGTTTGT 64728 Query 66066 GCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGAT 66125 || | | || ||||| ||| | || || || | || ||||| |||||| || ||| Sbjct 64729 GCGTTTGTAGATGCCGAGCATGCACTTGATCCGGCCTATGCCGCCAAGCTCGGCGTTGAT 64788 Query 66126 GTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 66185 | || || | || | | || ||||| || |||||||| || |||||||| | ||| Sbjct 64789 TTAGATGATTTTGTTGATTCACAACCAGATACAGGCGAGCAAGCGCTGGAGATTGCAGAC 64848 Query 66186 CTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGT-TGTGGACTCTGTGGCGGCCCTGGT 66244 | ||| ||||| | || | | | || |||||| || ||||| || ||| Sbjct 64849 ACATTGGTCCGCTCTGGTGCTGTGGACGTTCTGGTGTGTGGATTCGGTGGCAGCGCTGAC 64908 Query 66245 GCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCT 66304 |||||| || || || ||||| || || || ||| | ||||| || || || | Sbjct 64909 GCCGCGAGCAGAACTTGAAGGTGATATGGGCGACAGTCTTCCAGGCCTTCAGGCGCGTTT 64968 Query 66305 GATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAA---CACGCTCAC 66361 |||| |||||| |||||||||||||||| |||| | | | || || | ||| Sbjct 64969 GATGAGCCAGGCCTTGCGCAAGCTGACCGGGTCGATCTCGAAATCAAATTGCATGGTCA- 65027 Query 66362 CCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGGC---CCGAATGA 66418 | | | || ||| | || |||||| || ||| | ||| ||| || Sbjct 65028 --TTTTCATCAACCAGATCCGGATGAAGATTGG---GGTGATGTTTGGCAGTCCG---GA 65079 Query 66419 GACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAG 66478 || || || || || || || ||| |||||| |||| ||||| | ||| | ||| | Sbjct 65080 AACAACAACAGGGGGAAATGCGCTGAAATTCTACTCCTCTGTGCGCCTCGATATTCGCCG 65139 Query 66479 GATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGT 66538 |||| | || ||||| | ||||||| | |||| | | || || || || | || Sbjct 65140 TATCGGCGCCATCAAGGATCGTGATGAGGTCATTGGCATCAG-ACCCGTGTTAAAATCGT 65198 Query 66539 CAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGG 66598 || ||||| | || || ||| ||| || |||||| |||| | || ||||| || Sbjct 65199 GAAAAACAAAGTCGCACCACCGTTTCGCGTGGTCGAGTTTGACATCATTTATGGCGAAGG 65258 Query 66599 CATTTC 66604 |||||| Sbjct 65259 CATTTC 65264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242467081413716