Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq932 205 9e-48 seq864 176 4e-39 >seq932 Length=795108 Score = 205 bits (226), Expect = 9e-48 Identities = 811/1259 (64%), Gaps = 23/1259 (2%) Strand=Plus/Plus Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038 || |||| ||||| ||| || ||||| ||| ||||| | || || || ||||| Sbjct 205962 GGCATTTACGACA-CCTGAAACGTTGTGCCGTCATTTCAAAGTCTGCCGGCGGTATCGGC 206020 Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098 || |||||| || | | | || | ||||| || || || |||||||| || ||| Sbjct 206021 CTCGCCGTCCACAACATCAGGGGCACTCGGTCCTATATTCGAGGCACCAATGGTACTTCC 206080 Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158 || || | |||||||||||| |||| | ||| || | || | || || || ||||| Sbjct 206081 AATGGAATTGTCCCTATGCTCAGGGTGTACAATGACACCGCCAGGTATGTTGATCAGGGC 206140 Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218 || |||| | | ||||| | || || |||| | ||||||||||| || ||| | | Sbjct 206141 GGCGGGAAGCGTAAGGGCGCCTTTGCAATCTACTTGGAGCCCTGGCATGCAGACATTCTC 206200 Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278 | |||| | ||| |||| ||||| || ||||| || | || | || || || |||||| Sbjct 206201 GATTTCCTAGACTTGCGGAAGAATCATGGCAAGGA-GAGCAGCGTGCAAGGGATCTCTTC 206259 Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338 || | |||||| | ||||| | ||||||||| | |||||| |||| | | ||| Sbjct 206260 TATGGACTCTGGATTCCAGATTTGTTTATGAAAAGGGTCGAGGAAAATGCTTCATGGTCC 206319 Query 94339 CTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCG-TTTTGAAGA 94397 || || ||||| ||||| ||||| ||| | || |||| ||| | || ||||| || Sbjct 206320 CTCTTCTGTCCGAATGAGGCACCCGGTCTGGCTGATGTTTATGG-TGACGAATTTGAGGA 206378 Query 94398 CTTGTATGCTCGTTACGA-ATCGCAGGGCAAGGCCAGG--AAGGTTATGGATGCTAGGAA 94454 | || ||||| | ||||| | || ||| || | || ||||| | || Sbjct 206379 GCTCTACATGAAATACGAGAAACAAGGGCGA-GCAAGGGCAAAG--ATTGATGCGCGAAA 206435 Query 94455 GCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAA 94514 | | ||| | || |||| | ||| | ||||| || || || ||||| | | || Sbjct 206436 GGTTTGGTACGCTATTTTGGAGGCGCAGATTGAGACCGGAACCCCATACATGCTCTATAA 206495 Query 94515 GGACT-CTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATC 94573 ||| | |||| ||| ||| |||||||||| ||||||| || |||| ||| Sbjct 206496 GGATTCCTGT-AACAGGAAGAGCAACCAGCAGAACCTCGGTACCATTCGTTGCTCAAATT 206554 Query 94574 TGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCT 94633 |||| || |||||| | || || || || || || ||| |||| ||||| || ||| || Sbjct 206555 TGTGTACTGAGATTATTGAATACACCTCACCCGATGAGGTTGCCGTGTGCAATTTGGCCT 206614 Query 94634 CCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC-ACG--TCTACTGCTTCGTTCGATC 94690 |||| || || || || |||| | | || | | || | || | | ||| | Sbjct 206615 CCATTGCACTCAACAAATTTGTTCGAGTTTCTGACGATGGCTCCGCCCCTACCTACGACC 206674 Query 94691 TGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAATCGACA 94750 || | | | | | | | | ||| | | | || |||||| | |||| |||| Sbjct 206675 ACGACGCATTGGGGGAGATTGTGAGAATGGTAACCAACAATTTGAACAAGATAATTGACA 206734 Query 94751 AGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCA 94810 ||||| ||||| || |||||| ||| || ||| ||| ||| || || || || | Sbjct 206735 TCAACTTTTACCCGGTTGAGGAGGCCAAGAGGTCCAACTTGAGGCACCGTCCGATAGGTA 206794 Query 94811 TCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCG 94870 |||| ||||| || | ||||| | | | |||||||| |||| | ||| | | Sbjct 206795 TCGGAGTCCAAGGGCTGGCGGATACCTTCATTTTGATGCGTATGCCATTCGAGAGCGAAG 206854 Query 94871 ACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGC-CATGAAACAA 94929 | ||| || | || | |||||||||| | || |||||| || || | | Sbjct 206855 AGGCGCGGGAGCTAAACAAGGACATATTCGAGACGATCTATTACCATGCTGTTGCGGCCA 206914 Query 94930 TCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTG 94989 | | | ||||| ||| | | ||||| | || ||| | || |||||| || Sbjct 206915 GCTGCCAACTTG----CGTCGCATGATGGGCCGTATGAGACGTACATTGGCTCGCCCATG 206970 Query 94990 GAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGC---CCTCGGGTCTGTACGAC 95046 |||||| | || ||||| ||| | ||||| |||| | || || | | | Sbjct 206971 TCACAGGGTCTATTCCAGTTTGACTTGTGGGGCACAAAGCCAACATCTGGCCGTTGGAAT 207030 Query 95047 TGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCC 95106 ||||| | || | | || | | |||||| || | |||||||| || Sbjct 207031 TGGGAGGAACTCAGGCAAAAGGTGCTGCAGTCCGGTGTTCGTAATTCACTGCTTGTTGCA 207090 Query 95107 CCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTC 95166 || ||||| ||||| || ||| | ||||| | |||||||| |||| || || || | | Sbjct 207091 CCGATGCCAACGGCGTCAACGTCCCAGATTTTGGGCAACAATGAGTGCTTTGAGCCTTAC 207150 Query 95167 ACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCA 95225 || |||||| |||||| | | ||||| |||| || || | || | |||| ||| Sbjct 207151 ACGTCCAACTTGTACACTCGCAGAGTGCTATCCGGAGAGTTTTGCATCGTAAACACGCA 207209 >seq864 Length=1598700 Score = 176 bits (194), Expect = 4e-39 Identities = 771/1217 (63%), Gaps = 23/1217 (2%) Strand=Plus/Minus Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038 || |||| ||||| | || ||||| ||| ||||| | || || || ||||| Sbjct 469789 GGCATTTACGACACNNTGAANCGNTGTGCCGTCATTTCAAAGTCTGCCGGCGGTATCGGC 469730 Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098 || |||||| || | | | || | ||||| || || || |||||||| || ||| Sbjct 469729 CTCGCCGTCCACAACATCAGGGGCACTCGGTCCTATATTCGAGGCACCAATGGTACTTCC 469670 Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGT 94158 || || | ||||| ||||| |||| | ||| || | || | || || || ||||| Sbjct 469669 AATGGAATTGTCCCNATGCTNAGGGTGTACAATGACACCGCCAGGTATGTTGATCAGGGC 469610 Query 94159 GGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAG 94218 || |||| | | ||||| | || || |||| | ||||||||||| || ||| | | Sbjct 469609 GGCGGGAAGCGTAAGGGCGCCTTTGCAATCTACTTGGAGCCCTGGCATGCAGACATTCTC 469550 Query 94219 GCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTC 94278 | ||| | ||| || | ||||| || ||||| || | || | || || || |||||| Sbjct 469549 GATTTNCTAGACTTGNGGAAGAATCATGGCAAGGAAGAGCAGCGTGCAAGGGATCTCTTC 469490 Query 94279 TACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGT 94338 || | |||||| | || || | ||||||||| | || ||| |||| | ||| Sbjct 469489 TATGGNCTCTGGATTCCNGATTTGTTTATGAAAAGGGTNGAGGAAAATGNTTCATGGTCC 469430 Query 94339 CTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCG-TTTTGAAGA 94397 || || ||||| ||||| ||||| ||| | || |||| ||| | || ||||| || Sbjct 469429 CTCTTCTGTCCGAATGAGGCACCCGGTCTGGCTGATGTTTATGG-TGNCGAATTTGAGGA 469371 Query 94398 CTTGTATGCTCGTTACGA-ATCGCAGGGCAAGGCCAGG---AAGGTTATGGATGCTAGGA 94453 | || ||||| | ||||| | || ||| ||| || || || | | Sbjct 469370 GCTNTACATGAAATACGAGAAACAAGGGCGA-GCAAGGGCNAAG---ATTGANGCGCGNA 469315 Query 94454 AGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCA 94513 || | ||| | || |||| | ||| | ||||| || || || ||||| | | | Sbjct 469314 AGGTTTGGTACGCTATTTTGGAGGCGCAGATTGAGACCGGAACCCCATACATGCTNTATA 469255 Query 94514 AGGACT-CTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAAT 94572 |||| | |||| ||| ||| |||||||||| ||||||| || |||| ||| Sbjct 469254 AGGATTCCTGT-AACAGGAAGAGCAACCAGCAGAACCTCGGTACCATTCGTTGCTCNAAT 469196 Query 94573 CTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGC 94632 |||| || |||||| | || || || || || || ||| |||| ||||| || ||| | Sbjct 469195 TTGTGTACTGAGATTATTGAATACACCTCACCCGATGAGGTTGCCGTGTGCAANTTGGCC 469136 Query 94633 TCCATCAACCTGTCCACTTTCGTGCGAG---ATGCCTACACGTCTACTGCTTCGTTCGAT 94689 ||||| || || || || ||| || | | || | || | | ||| Sbjct 469135 TCCATTGCACTCAACAAATTTGTTCGANTTTCTGNCGATGGNTCCGCCCCTACCTACGAC 469076 Query 94690 CTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAATCGAC 94749 | || | | | | | | | | ||| | | | || |||||| | |||| ||| Sbjct 469075 CACGACGCATTGGGGGAGATTGTGAGAATGGTAACCAACAATTTGAACAAGATAATTGAC 469016 Query 94750 AAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGC 94809 | ||||| ||||| || |||||| ||| || ||| ||| ||| || || || || Sbjct 469015 ATCAACTTTTACCCGGTTGAGGAGGCCAAGAGGTCCAACTTGAGGCACCGTCCGATAGGT 468956 Query 94810 ATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTC 94869 ||||| ||||| || | ||||| | | | |||||||| |||| | ||| | Sbjct 468955 ATCGGAGTCCAAGGGCTGGCGGATACCTTCATTTTGATGCGTATGCCATTCGAGAGCGAA 468896 Query 94870 GACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGC-CATGAAACA 94928 || ||| || | || | |||||||||| | || |||||| || || | Sbjct 468895 GAGGCGCGGGAGCTAAACAAGGACATATTCGAGACGATCTATTACCATGCTGTTGCGGCC 468836 Query 94929 ATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCCCTT 94988 | | | ||||| ||| | | ||||| | || ||| | || |||||| | Sbjct 468835 AGNTGCCAACTTG----CGTCGCATGATGGGCCGTATGAGACGTACATTGGCTCGCCCAT 468780 Query 94989 GGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGC---CCTCGGGTCTGTACGA 95045 | |||||| | || ||||| ||| | ||||| |||| | || || | | | Sbjct 468779 GTCACAGGGTCTATTCCAGTTTGACTTGTGGGGCACAAAGCCAACATCTGGCCGNTGGAA 468720 Query 95046 CTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGC 95105 ||||| | || | | || | | |||||| || | |||||||| || Sbjct 468719 TTGGGAGGAACTNAGGCAAAAGGTGCTGCAGTCCGGTGTTCGTAATTCACTGCTTGTTGC 468660 Query 95106 CCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTT 95165 || ||||| ||||| || ||| | ||||| | |||||||| |||| || || || | Sbjct 468659 ACCGATGCCAACGGCGTCAACGTCCCAGATTTTGGGCAACAATGAGTGCTTTGANCCNTA 468600 Query 95166 CACCTCCAACGTGTACA 95182 ||| |||||| |||||| Sbjct 468599 CACGTCCAACTTGTACA 468583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494716255323080