Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq557 98.7 7e-16 seq492 98.7 7e-16 seq99 89.7 4e-13 >seq557 Length=252103 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || |||| ||| | |||||| ||||| || || ||||| || || | ||| | || Sbjct 156090 AATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGGTTCGGCCATCC 156031 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || ||||||||| | ||||||||||| |||||| ||||| || ||||| || Sbjct 156030 TCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTATCC 155971 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| | || ||| |||| || || || ||| || || | ||||| || Sbjct 155970 TGGATCTTGGTCTTCACATTTTCAATCGTGTCCGACGATTCCACCTCAAGCGTAATCGTC 155911 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || || |||||||| ||||| Sbjct 155910 TTACCCGTAAGCGTCTTCACAAAAATCTGCAT 155879 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| ||||| || || || |||||||||||||| | | | | | || || | || Sbjct 156536 ATGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAAAGTACGACCATCCTCAAGCTG 156477 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | |||| |||||| |||||| ||||| || |||||||| || || Sbjct 156476 CTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTT 156417 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 | | || ||| |||| || || || | || || || || | ||||| || || || | Sbjct 156416 GGTCTTCACATTTTCAATCGTGTC-CGATGACTCAACTTCAAGCGTAATAGTCTT-CCAG 156359 Query 15152 TCAGAGTTTTTACAAAAATTTGCATA 15177 ||| || || || ||||| |||||| Sbjct 156358 TCAACGTCTTAACGAAAATCTGCATA 156333 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || |||| ||| | |||||| ||||| || || ||||| || || | ||| | || Sbjct 156318 AATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGGTTCGGCCATCC 156259 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || ||||||||| | ||||||||||| |||||| ||||| || ||||| || Sbjct 156258 TCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTATCC 156199 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTA-AGGTAATGG 15142 || ||| | || ||| |||| || ||||| | || || || || | |||||| | Sbjct 156198 TGGATCTTGGTCTTCACATTTTC-ATCGTATC-CGATGACTCAACTTCAAGCGGTAATAG 156141 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || |||| || || || ||||| |||||| Sbjct 156140 TCTTTCCAGTCAACGTCTTAACGAAAATCTGCATA 156106 >seq492 Length=1085467 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| ||||| || || || |||||||||||||| | | | | || || | || Sbjct 146938 TGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAAGGTACGACCATCCTCAAGCTGC 146997 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||||||| | |||| |||||| |||||| ||||| || |||||||| || ||| Sbjct 146998 TTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTTG 147057 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| |||| || || || || || || | ||||| || ||||| || Sbjct 147058 GTCTTCACATTTTCAATGGTGTCCGACGACTCCACCTCAAGCGTAATCGTCTTACCCGTA 147117 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||| |||||| Sbjct 147118 AGCGTCTTCACAAAAATCTGCATA 147141 >seq99 Length=379092 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| ||||| || || ||| | |||||||||||| || ||| |||| || Sbjct 173876 ACCAAATGGAGGGTTGACTCCTTTGG-ATGTTGTAATCGACAAGG-TTCGGTCGTCCTCC 173933 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 ||||| || || || | |||| |||||||||||| | ||||| || |||||||| Sbjct 173934 AATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGAATGCCCTCCTTGTCTTGG 173993 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTTT 15146 || || || ||| || | || | || | || |||||| || | ||| ||||| || Sbjct 173994 ATCTTTGACTTGACATTTGCAATGTTGTC-CGATGATTCTACCTCAAGGGTGATGGTCTT 174052 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || ||||| ||||| Sbjct 174053 CCCGGTTAGAGTCTTGACGAAAATCTGCAT 174082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357387108532055