Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq475 116 3e-21 seq99 100 3e-16 seq492 89.7 5e-13 >seq475 Length=1546706 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 |||||||| || | | ||| | ||| || ||||| ||||||||||| |||||||| Sbjct 934394 CCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTTTGGATGTTATAATCCGAC 934453 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || |||||||| ||||| || | |||| || || |||||| | ||| Sbjct 934454 AAGGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGA 934513 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || ||||| || ||| |||| | | ||| |||| || || || || Sbjct 934514 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACATTTGCAACGTTGTCCGACGATTCTACC 934573 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || ||||||||||| || || ||||| ||||| Sbjct 934574 TCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCAT 934620 >seq99 Length=379092 Score = 100 bits (110), Expect = 3e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 |||||||| || | | ||| | ||| || ||||| |||||| |||| || |||||| Sbjct 173858 CCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTT-GGATGTTGTAATCGACA 173916 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || |||||||| ||||| || | |||| || || |||||| | ||| Sbjct 173917 A-GGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGA 173975 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || ||||| || ||| |||| | | | | |||| || || || || Sbjct 173976 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACATTTGCAATGTTGTCCGATGATTCTACC 174035 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || ||||||||||| || || ||||| ||||| Sbjct 174036 TCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCAT 174082 >seq492 Length=1085467 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || || || || || || ||||| || || || || || Sbjct 148051 ATGCCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCA 148110 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || || || | || || |||||| | || | || ||||||||||| Sbjct 148111 CTCAACGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGG 148170 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || || ||||| |||| || | || | ||||| || ||||| Sbjct 148171 GGGATGCCTTCCTTGTCCTGGATTTTGGTCTTGA-CGTTCTCAATCGTGTCCGAGGACTC 148229 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | |||||||| || || || || ||||| || ||||| Sbjct 148230 GACCTCGAGTGTGATTGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 148280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || |||||| | || | || ||||||||||| || |||||||| || || || ||| Sbjct 148363 TGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATT 148422 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || |||| || | || | ||||| || |||||||| ||||| || | |||||||| Sbjct 148423 TTGGTCTTGA-CGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTTGCC 148481 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||| || ||||| Sbjct 148482 CGTGAGGGTCTTCACAAAGATCTGCAT 148508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || |||||| | || | || ||||||||||| || |||||||| || || || ||| Sbjct 148591 TGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATT 148650 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || |||| || | || | ||||| || |||||||| ||||| || | |||||||| Sbjct 148651 TTGGTCTTGA-CGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTTGCC 148709 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCATCGC 45343 || || || || ||||| || ||||| || Sbjct 148710 CGTGAGGGTCTTCACAAAGATCTGCATGGC 148739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451996855005080