Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq932 168 8e-37 seq864 154 2e-32 seq251 114 2e-20 seq33 111 2e-19 seq827 96.9 4e-15 seq489 96.9 4e-15 seq28 96.9 4e-15 >seq932 Length=795108 Score = 168 bits (186), Expect = 8e-37 Identities = 394/589 (67%), Gaps = 8/589 (1%) Strand=Plus/Minus Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 ||||| || ||||| || |||||||||||||| | |||||| || | ||||| || Sbjct 206579 GTGTATTCAATAATCTCAGTACACAAATTTGAGCAACGAATGGTACCGAGGTTCTGCTGG 206520 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||| ||||||| | |||||| |||||||| ||||| || || ||||| | || Sbjct 206519 TTGCTCTTCCTGTTACAGGAATCCTTATAGAGCATGTATGGGGTTCCGGTCTCAATCTGC 206460 Query 116593 GACTTGAGAATAGCCTTCCATACATCG-GCGGCTGGCACAGTGGCGTTGGCTCGCCCCTC 116651 | || | |||||| | ||| || | ||| | | || | ||| ||||||| | Sbjct 206459 GCCTCCAAAATAGCGTACCAAACCTTTCGCGCATCAATCTTTGCCCTTG-CTCGCCCTTG 206401 Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGG 116711 | |||||| || ||||||| ||||||| || ||||| | | || | || || || Sbjct 206400 TTTCTCGTATTTCATGTAGAGCTCCTCAAATTCGTCACCATAAACATCAGCCAGACCGGG 206341 Query 116712 TGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 116771 ||||| || ||||||||||| |||||| | || ||||| |||| ||||| || | Sbjct 206340 TGCCTCATTCGGACAGAAGAGGGACCATGAAGCATTTTCCTCGACCCTTTTCATAAACAA 206281 Query 116772 GTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCT-TCATCCCCCTGAT 116830 ||||| |||||||| | |||||||||||| || ||| || || | || |||| Sbjct 206280 ATCTGGAATCCAGAGTCCATAGAAGAGATCCC--TTGCACGCTGCTCTCCTTGCCATGAT 206223 Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 | ||||| || | || || | || || || ||||| || |||| ||| | || | Sbjct 206222 TCTTCCGCAAGTCTAGGAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAA 206163 Query 116891 TTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGC 116947 | ||||| || | || |||| | |||||||| || || | || | || | Sbjct 206162 AGGCGCCCTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCC 206103 Query 116948 GAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGG 117007 ||||| || | || |||| || ||||| || || |||||| ||| || Sbjct 206102 TGAGCATAGGGACAATTCCATTGGAAGTACCATTGGTGCCTCGAATATAGGACCGAGTGC 206043 Query 117008 CTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGAT 117056 | |||| | ||||| | | || ||||| || || ||||||| || Sbjct 206042 CCCTGATGTTGTGGACGGCGAGGCCGATACCGCCGGCAGACTTTGAAAT 205994 >seq864 Length=1598700 Score = 154 bits (170), Expect = 2e-32 Identities = 386/589 (66%), Gaps = 7/589 (1%) Strand=Plus/Plus Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 ||||| || ||||| || ||||||||||| || | |||||| || | ||||| || Sbjct 469170 GTGTATTCAATAATCTCAGTACACAAATTNGAGCAACGAATGGTACCGAGGTTCTGCTGG 469229 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||| ||||||| | |||||| || ||||| ||||| || || ||||| | || Sbjct 469230 TTGCTCTTCCTGTTACAGGAATCCTTATANAGCATGTATGGGGTTCCGGTCTCAATCTGC 469289 Query 116593 GACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCC 116652 | || | |||||| | ||| || | || | | || | |||||||| | Sbjct 469290 GCCTCCAAAATAGCGTACCAAACCTTNCGCGCNTCAATCTTNGCCCTTGCTCGCCCTTGT 469349 Query 116653 TCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGT 116712 | |||||| || |||| || ||||||| || |||| | | || | || || ||| Sbjct 469350 TTCTCGTATTTCATGTANAGCTCCTCAAATTCGNCACCATAAACATCAGCCAGACCGGGT 469409 Query 116713 GCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 116772 |||| || ||||||||||| |||||| | || ||||| |||| ||||| || | Sbjct 469410 GCCTCATTCGGACAGAAGAGGGACCATGAANCATTTTCCTCNACCCTTTTCATAAACAAA 469469 Query 116773 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGAT 116830 || || |||||||| | |||||||||||| || ||| ||||| | || |||| Sbjct 469470 TCNGGAATCCAGAGNCCATAGAAGAGATCCC--TTGCACGCTGCTCTTCCTTGCCATGAT 469527 Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 | | ||| || | || || | || || || ||||| || |||| ||| | || | Sbjct 469528 TCTTCCNCAAGTCTAGNAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAA 469587 Query 116891 TTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGC 116947 | ||||| || | || |||| | |||||||| || || | || | || | Sbjct 469588 AGGCGCCCTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCC 469647 Query 116948 GAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGG 117007 ||||| || | || |||| || ||||| || || |||||| ||| || Sbjct 469648 TNAGCATNGGGACAATTCCATTGGAAGTACCATTGGTGCCTCGAATATAGGACCGAGTGC 469707 Query 117008 CTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGAT 117056 | |||| | ||||| | | || ||||| || || ||||||| || Sbjct 469708 CCCTGATGTTGTGGACGGCGAGGCCGATACCGCCGGCAGACTTTGAAAT 469756 >seq251 Length=68518 Score = 114 bits (126), Expect = 2e-20 Identities = 264/384 (69%), Gaps = 14/384 (4%) Strand=Plus/Minus Query 12689 CACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAAT 12748 ||| ||||||| ||| ||||| ||||||||||| || || ||| |||||| | |||| Sbjct 40037 CACCGTGATCTGACGGTCAAAACGACCTGGGCGCAGAAGCGCGGGGTCAAGCACATCAGG 39978 Query 12749 GCGGTTCGTCGCCGCGATGACAACGATGCC--CGTCTCGTTATCGAAGCCATCCATCTCA 12806 ||| | ||||||||||| | || | ||| | | ||| || || |||||||||||| Sbjct 39977 ACGG-TGGTCGCCGCGATAATAATCACGCCTTCAT-TCG-CCTCAAAACCATCCATCTCA 39921 Query 12807 GTCAAG-AGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCGGGCATACCACCCGCA 12863 |||| || || || | ||||| || || ||||| || ||| | | | |||| ||| Sbjct 39920 -ACAAGAAGCTGGTTCAGCGTTTGCTCGCGCTCATCGTTACCGCCGCC--AACACCGGCA 39864 Query 12864 CTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCA 12923 | || || ||| || || || || || || ||||| | || |||||| ||| | Sbjct 39863 CCCCGGTGACGACCCACAGCATCGATCTCATCGATGAAGATAATGCACGGTGAATTCTTT 39804 Query 12924 CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 12983 | | | ||||| || || || || | ||||||||||||||| ||||| || || Sbjct 39803 TTGCCTGC-TCAAACATGTCGCGGACCCGTGAGGCACCGACACCCACGAACATTTCAACG 39745 Query 12984 AAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGC 13042 || | | ||| | || | || || || || |||| ||||| || | || ||||| Sbjct 39744 AAGTCAGAACCGG-AGATGGTGAAAAACGGCACATTGGCCTCACCAGCCACAGCGCGGGC 39686 Query 13043 GAGGAGGGTCTTCCCCGTCCCTGG 13066 || || || || || ||||| || Sbjct 39685 GATCAGTGTTTTACCAGTCCCCGG 39662 >seq33 Length=841369 Score = 111 bits (122), Expect = 2e-19 Identities = 200/290 (69%), Gaps = 13/290 (4%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 ||||| ||||||||||| || || | || | |||||| | ||| ||||| || || Sbjct 175088 CGATCGAAGCGACCTGGACGCAGCAAAGCCTGGTCAAGAACATCCGCACGGTTTGTGGCA 175029 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 || ||||||| || || | | | || || || |||||||||||||| | ||| || Sbjct 175028 GCTATGACAATGACACCAGAGTTGCCTTCAAACCCGTCCATCTCAGTCAACATTTGGTTC 174969 Query 12822 ATGGTTTGTTCACGTTCATCATT---CGCGGGCATACCACCCGCACTGCGTTGCTTACCG 12878 | || |||||||| |||||||| | | | || ||| |||| | ||| ||| Sbjct 174968 AGAGTCTGTTCACGCTCATCATTACCCCCAGCAATTCCA---GCACCCCTCTGCCGTCCG 174912 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACG---GTTGATTTTCACGGGCAACTTCA 12935 || || ||||| || |||||||||||||| || | ||| ||||| || | | Sbjct 174911 ACAGCATCAATCTCATCAATGAAAACGATGCAGGAGCGTTCTTTTTCGCGTTC----GCG 174856 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 |||| || || |||| ||||| ||||| |||||||| ||||| || Sbjct 174855 AAGAGGTCCCGGACTCGAGAAGCACCCACACCAACAAACATTTCCACGAA 174806 >seq827 Length=2024298 Score = 96.9 bits (106), Expect = 4e-15 Identities = 197/290 (68%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 ||||| ||||||||||| || || | || | |||||| | ||| ||||| || || Sbjct 1044409 CGATCGAAGCGACCTGGACGCAGCAAAGCCTGGTCAAGAACATCCGCACGGTTTGTAGCA 1044350 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 || ||||||| || || | | | || ||||| |||||||||||||| | || || Sbjct 1044349 GCTATGACAATGACACCAGAGTTGCCTTCAAAGCCGTCCATCTCAGTCAACATCTGGTTC 1044290 Query 12822 ATGGTTTGTTCACGTTCATCATT--CGCGGGCATACCACCCGCACTGCGTTGCTTACCGA 12879 | || |||||||| ||||| || | | || | || |||| | ||| |||| Sbjct 1044289 AGAGTCTGTTCACGCTCATCGTTACCCCCAGC--AATTCCGGCACCCCTCTGCCGTCCGA 1044232 Query 12880 CGGCGTCAATTTCGTCAATGAAAACGATACACG----GTTGATTTTCACGGGCAACTTCA 12935 | || ||||| || |||||||||||||| || | ||| ||||| || | | Sbjct 1044231 CAGCATCAATCTCATCAATGAAAACGATGCAAGGAGCGTTCTTTTTCGCGTTC----GCG 1044176 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 |||| || || |||| ||||| || || |||||||| ||||| || Sbjct 1044175 AAGAGGTCCCGGACTCGGGAAGCACCTACGCCAACAAACATTTCCACGAA 1044126 >seq489 Length=1032923 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||| ||||| ||||| | ||| ||||| || | || | ||| | || || ||| Sbjct 355074 CCCTCATCACGTGAGATCAATTCGTTCGAAAACGTTAATCCAGACATCAACCCGCGTTTC 355015 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 ||||| |||||||||||||||| || || |||||||| |||||||||||| || ||| Sbjct 355014 TTCAAGTAGAAAATCGCACAAAACGACCCTGAGAAGAAAATCCCCTCCACAGCTGCAAAC 354955 Query 127658 GCAAATAGACGCTCGGCAAAG 127678 || | | ||||| |||||| Sbjct 354954 GCCACCAATCGCTCCGCAAAG 354934 >seq28 Length=612614 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||| ||||| ||||| | ||| ||||| || | || | ||| | || || ||| Sbjct 279225 CCCTCATCACGTGAGATCAATTCGTTCGAAAACGTTAATCCAGACATCAACCCGCGTTTC 279284 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 ||||| |||||||||||||||| || || |||||||| |||||||||||| || ||| Sbjct 279285 TTCAAGTAGAAAATCGCACAAAACGACCCTGAGAAGAAAATCCCCTCCACAGCTGCAAAC 279344 Query 127658 GCAAATAGACGCTCGGCAAAG 127678 || | | ||||| |||||| Sbjct 279345 GCCACCAATCGCTCCGCAAAG 279365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613498587892680