Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq557 132 5e-26 seq492 125 7e-24 seq475 116 4e-21 seq99 109 5e-19 >seq557 Length=252103 Score = 132 bits (146), Expect = 5e-26 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || |||||||||||||| ||||| |||| |||||| || | Sbjct 154744 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTCA 154803 Query 38304 GACA-GCGTGCAAACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | || |||| | |||| ||||||| ||||| || || || ||| ||||| Sbjct 154804 GACACGATTGAGAACG--TCAAGACCAAAATCCAGGACAAGGAAGGCATCCCC--CGACC 154859 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || |||| |||||| | | ||||||| Sbjct 154860 AGCAGCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGACGGACGCACCTTGAGTGACTACA 154919 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || ||||| | || || || ||||| || ||| | |||| ||| Sbjct 154920 ACATTCAGAAGGAGTCCACCCTTCACTTGGTCCTCCGTCTCCGAGGTGGC 154969 Score = 102 bits (112), Expect = 8e-17 Identities = 163/229 (71%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | || || || || || || | || || ||| | | Sbjct 156334 ATGCAGATTTTCGTTAAGACGTTGACTGG-AAGACTATTACGCTTGAAGTTGAGTCATCG 156392 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | || ||| | | |||| || |||| ||||| ||||| ||||| |||||| Sbjct 156393 GACACGATTGAAAATG--TGAAGACCAAGATCCAGGACAAGGAGGGTATTCCGCCCGACC 156450 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| ||| ||||| ||||| || || | || || | | ||| |||| Sbjct 156451 AGCAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACTTTGAGCGATTACA 156510 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || || ||| | ||||| ||| || | ||||| Sbjct 156511 ACATCCAGAAGGAGTCTACTCTTCATCTTGTGCTCCGTCTGCGCGGCGG 156559 >seq492 Length=1085467 Score = 125 bits (138), Expect = 7e-24 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || |||||||||||||| ||||| |||| |||||| || | Sbjct 148508 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTCG 148449 Query 38304 GACA-GCGTGCAAACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | || |||| | |||| ||||||| ||||| || || || ||| | |||| Sbjct 148448 GACACGATTGAGAACG--TCAAGACCAAAATCCAGGACAAGGAAGGCATCCCCCCGGACC 148391 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || |||| ||||| | | ||||||| Sbjct 148390 AGCAGCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGACGGACGCACGTTGAGTGACTACA 148331 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || ||||| | || || || |||| || ||| | |||| ||| Sbjct 148330 ACATTCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCCGAGGTGGC 148281 Score = 125 bits (138), Expect = 7e-24 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || |||||||||||||| ||||| |||| |||||| || | Sbjct 148736 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTCG 148677 Query 38304 GACA-GCGTGCAAACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | || |||| | |||| ||||||| ||||| || || || ||| | |||| Sbjct 148676 GACACGATTGAGAACG--TCAAGACCAAAATCCAGGACAAGGAAGGCATCCCCCCGGACC 148619 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || |||| ||||| | | ||||||| Sbjct 148618 AGCAGCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGACGGACGCACGTTGAGTGACTACA 148559 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || ||||| | || || || |||| || ||| | |||| ||| Sbjct 148558 ACATTCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCCGAGGTGGC 148509 Score = 122 bits (134), Expect = 9e-23 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || |||||||||||||| ||||| |||| |||||| || | Sbjct 148280 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTCG 148221 Query 38304 GACA-GCGTGCAAACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | || |||| | |||| ||||||| ||||| || || || ||| | |||| Sbjct 148220 GACACGATTGAGAACG--TCAAGACCAAAATCCAGGACAAGGAAGGCATCCCCCCGGACC 148163 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || |||| ||||| | | ||||||| Sbjct 148162 AGCAGCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGACGGACGCACGTTGAGTGACTACA 148103 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||| || ||||| | || || || |||| || ||| Sbjct 148102 ACATTCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGT 148065 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| ||||| || || || || | || || ||| | | Sbjct 147140 ATGCAGATTTTTGTGAAGACGCTTACGGGTAAGACGATTACGCTTGAGGTGGAGTCGTCG 147081 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | ||| | | |||| || |||| ||||| ||||| ||||| |||||| Sbjct 147080 GACACCATTGAAAATG--TGAAGACCAAGATCCAGGACAAGGAGGGTATTCCGCCCGACC 147023 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| ||| ||||| ||||| || || | || ||| | | ||| |||| Sbjct 147022 AGCAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACCTTGAGCGATTACA 146963 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || || || | ||||| ||| || | ||||| Sbjct 146962 ACATCCAGAAGGAGTCTACTCTTCACCTTGTGCTCCGTCTGCGCGGCGG 146914 Score = 105 bits (116), Expect = 7e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 ||||| | ||||| ||||||||||| ||||||| ||||| || |||| ||| ||||| Sbjct 147284 AAAATTCAGGACAAGGAGGGAATTCCTCCCGACCAGCAGCGTCTGATTTTCGCTGGCAAG 147225 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || || | || ||| | | ||||||||||||||| || || | || ||||| Sbjct 147224 CAGCTTGAGGATGGTCGTACCTTGAGCGACTACAACATCCAGAAAGAGTCTACACTGCAC 147165 Query 38448 TTGGTGCTGCG 38458 |||||||| || Sbjct 147164 TTGGTGCTTCG 147154 Score = 102 bits (112), Expect = 8e-17 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || ||||| || || | || || ||| | | Sbjct 147824 ATGCAGATTTTTGTGAAGACATTGACTGGAAAAACGATTACGCTTGAAGTTGAGTCATCG 147765 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| | |||| || |||| ||||| ||||||||||| |||||| Sbjct 147764 GATACCATTGAGAACG--TGAAGACTAAGATCCAGGACAAGGAGGGAATTCCTCCCGACC 147707 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | ||| || || ||||| || |||| || ||| | | ||||||| Sbjct 147706 AGCAGCGTCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGACGTACCTTGAGTGACTACA 147647 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| || || | || ||||| |||||||||| Sbjct 147646 ACATCCAGAAAGAGTCTACATTGCATCTGGTGCTGCG 147610 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||||||||| ||||||| ||||| || |||| ||| ||||| ||||| || Sbjct 147503 GACAAGGAGGGAATTCCTCCCGACCAGCAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAG 147444 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | || ||| | | ||||||||||| || || || | || ||||| |||||||| Sbjct 147443 GATGGTCGTACCTTGAGTGACTACAACATTCAGAAAGAGTCTACATTGCATCTGGTGCTG 147384 Query 38457 CG 38458 || Sbjct 147383 CG 147382 >seq475 Length=1546706 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||||||| | || || || | | Sbjct 934620 ATGCAGATTTTCGTCAAGACTCTAACCGGGAAGACCATCACCCTTGAGGTAGAATCGTCG 934561 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| ||| ||||| | | || ||| |||| ||||| ||||| ||||| ||||| Sbjct 934560 GACAACGTTGCAAATG-TCAAGTCAAAGATCCAAGACAAGGAGGGCATTCCTCAGGACCA 934502 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || |||| || || || || |||| ||||| || ||| | || || || Sbjct 934501 ACAGCGTCTGATTTTTGCCGGAAAGCAATTGGAGGACGACCGAACCTTGTCGGATTATAA 934442 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || ||||||||||| ||| || | || || Sbjct 934441 CATCCAAAAGGAGTCAACCCTCCATTTGGTGCTCCGTCTGCGCGGAGG 934394 >seq99 Length=379092 Score = 109 bits (120), Expect = 5e-19 Identities = 164/228 (72%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||||||| | || || || | | Sbjct 174082 ATGCAGATTTTCGTCAAGACTCTAACCGGGAAGACCATCACCCTTGAGGTAGAATCATCG 174023 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | | || ||| |||| ||||| ||||| ||||| ||||| Sbjct 174022 GACAACATTGCAAATG-TCAAGTCAAAGATCCAAGACAAGGAGGGCATTCCTCAGGACCA 173964 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || |||| || || || || |||| ||||| || | ||| ||| ||||| Sbjct 173963 ACAGCGTCTGATTTTTGCCGGAAAGCAATTGGAGGACGACCG-AACCTTGTCGATTACAA 173905 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || ||||||||||| ||| || | || || Sbjct 173904 CATCC-AAAGGAGTCAACCCTCCATTTGGTGCTCCGTCTGCGCGGAGG 173858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500165778824320