Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq557 154 3e-32 seq492 138 3e-27 seq490 104 5e-17 >seq557 Length=252103 Score = 154 bits (170), Expect = 3e-32 Identities = 160/209 (77%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| |||||||| || ||||| ||||| || | ||| | || || || Sbjct 155176 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCA 155117 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || || || || | |||||||| ||||| ||| Sbjct 155116 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGGG--ATGCCTTCCTTGTCCTGA 155059 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| |||||||| ||||| |||||||||| |||||| Sbjct 155058 ATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGACTCCACCTCAAGGGTAATAGTCTTT 154999 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||||||| ||||| | ||||| Sbjct 154998 CCGGTCAAAGTTTTCACGAAAATCTGCAT 154970 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| ||||||||||| ||||| ||||| || | ||| | || || || Sbjct 155631 ACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCA 155572 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || || || |||||||| || || ||||| || Sbjct 155571 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGG 155512 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| || ||||| || |||||||| |||| |||||| Sbjct 155511 ATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACTTCAAGAGTAATAGTCTTT 155452 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 155451 CCAGTCAATGTCTTCACGAAAATCTGCAT 155423 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| ||||||||||| ||||| ||||| || | ||| | || || || Sbjct 155859 ACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCA 155800 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || || || |||||||| || || ||||| || Sbjct 155799 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGG 155740 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| || ||||| || |||||||| |||| |||||| Sbjct 155739 ATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACTTCAAGCGTAATAGTCTTT 155680 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | ||||| Sbjct 155679 CCAGTCAACGTCTTCACAAAAATCTGCAT 155651 Score = 118 bits (130), Expect = 2e-21 Identities = 117/148 (79%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 |||||| |||||||| || ||||| ||||| || |||| || | || || || |||| Sbjct 154945 GTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAG-GTGCGTCCGTCCTCAAGCT 154887 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| |||||||||||||| || || ||||| | || |||||||| ||||| || |||| Sbjct 154886 GCTTGCCTGCGAAGATAAGACGCTGCTGGTC--GGGGGATGCCTTCCTTGTCCTGGATTT 154829 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGA 195083 | ||||||||||||||| ||||| || Sbjct 154828 TGGTCTTGACGTTCTCAATCGTGTCTGA 154801 >seq492 Length=1085467 Score = 138 bits (152), Expect = 3e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCG-GCAAGAGTTCTCCCATCTTC 194990 |||||||||||||| ||||| || || || ||||||||| |||| || | ||||| || Sbjct 146932 ACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAAG-GTACGACCATCCTC 146990 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || ||||| || || || || ||||| || ||||| || || ||||| || Sbjct 146991 AAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTG 147050 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| || || |||||||||||||| ||||| ||||| |||| |||||| Sbjct 147051 GATCTTGGTCTTCACATTTTCAATGGTGTCCGACGACTCCACCTCAAGCGTAATCGTCTT 147110 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 147111 ACCCGTAAGCGTCTTCACAAAAATCTGCAT 147140 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || || || | || |||||||| ||||| ||||| || | ||| | || || Sbjct 147840 CAACACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGTCCGTC 147899 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || |||||||| || ||||| || || || || || || |||||||| || || ||||| Sbjct 147900 CTCAAGCTGCTTCCCAGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTC 147959 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || ||| || ||||| || |||||||| || |||||||| |||| ||| Sbjct 147960 CTGAATCTTCGTCTTAACATTCTCGATTGTGTCCGAGGACTCAACTTCAAGCGTAATCGT 148019 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||||||||||| || || || | ||||| Sbjct 148020 CTTTCCTGTCAAAGTCTTCACAAAAATCTGCAT 148052 Score = 131 bits (144), Expect = 4e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| |||||||| || ||||| ||||| || | || | || || || Sbjct 148072 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCA 148131 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| |||||||||||||| || || ||||| || || |||||||| ||||| || Sbjct 148132 AGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGG 148191 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 ||||| ||||||||||||||| |||||||| Sbjct 148192 ATTTTGGTCTTGACGTTCTCAATCGTGTCCGA 148223 Score = 131 bits (144), Expect = 4e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| |||||||| || ||||| ||||| || | || | || || || Sbjct 148300 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCA 148359 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| |||||||||||||| || || ||||| || || |||||||| ||||| || Sbjct 148360 AGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGG 148419 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 ||||| ||||||||||||||| |||||||| Sbjct 148420 ATTTTGGTCTTGACGTTCTCAATCGTGTCCGA 148451 Score = 131 bits (144), Expect = 4e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| |||||||| || ||||| ||||| || | || | || || || Sbjct 148528 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCA 148587 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| |||||||||||||| || || ||||| || || |||||||| ||||| || Sbjct 148588 AGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGG 148647 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 ||||| ||||||||||||||| |||||||| Sbjct 148648 ATTTTGGTCTTGACGTTCTCAATCGTGTCCGA 148679 Score = 129 bits (142), Expect = 1e-24 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 || |||||||| ||||| ||||| || |||| || | ||||| || |||||||| || Sbjct 147400 GTAGACTCTTTCTGAATGTTGTAGTCACTCAAG-GTACGACCATCCTCAAGCTGCTTGCC 147458 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||||| || || || || ||||| |||||||| || || ||||| ||||| || ||| Sbjct 147459 AGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGAATCTTAGTCTT 147518 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||||||||||| ||||| || |||||||| || | || ||||| ||||| || Sbjct 147519 CACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTTATAGTTTTTCCAGTCAATGT 147578 Query 195123 TTTTACGAACACTTGCAT 195140 || || || | ||||| Sbjct 147579 CTTCACAAAAATCTGCAT 147596 Score = 129 bits (142), Expect = 1e-24 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 || |||||||| || || ||||| || |||| || | || || || |||||||| || Sbjct 147628 GTAGACTCTTTCTGGATGTTGTAGTCACTCAAG-GTACGTCCGTCCTCAAGCTGCTTCCC 147686 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| || || || ||||| |||||||| || || ||||| || || || ||| Sbjct 147687 AGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGGATCTTAGTCTT 147746 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||||||||||| ||||| || |||||||| |||| ||| ||||| ||||| || Sbjct 147747 CACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTAATCGTTTTTCCAGTCAATGT 147806 Query 195123 TTTTACGAACACTTGCAT 195140 || || || | ||||| Sbjct 147807 CTTCACAAAAATCTGCAT 147824 >seq490 Length=1431960 Score = 104 bits (114), Expect = 5e-17 Identities = 207/296 (70%), Gaps = 13/296 (4%) Strand=Plus/Plus Query 125524 CTTCCAAAGAAACACGGCAGGGGAGGACAATCTGCTTTGCGTTTTGAGAGACTTCGAAAA 125583 || |||||||| ||||| | ||||||||||| || |||||||||| | | || Sbjct 843586 CTGCCAAAGAAGCACGGGCGCGGAGGACAATCAGCCTTGCGTTTTGCCCGCTTACGGTTG 843645 Query 125584 GAAAAGAGACACAACTATTTGAGGAAAGTCGCAGAGAATGCA---ACTCAATGTTTTTTG 125640 |||||| | ||||||| | || | ||||| || || | |||| ||||| | || || Sbjct 843646 GAAAAGCGTCACAACTTTGTGCGAAAAGTTGCTGAAATTGCAGTCACTCAGT-TTATTCC 843704 Query 125641 CAA--GACAACAAGTGCAACGTCATTGGGATTGTCATTGCTGGATCGGCAGAGTTCAAAA 125698 | | |||| ||||| ||||||| ||| || || |||| ||||| ||||| ||||| | Sbjct 843705 CGATGGACAGAAAGTG-AACGTCACTGGCCTTATCCTTGCGGGATCTGCAGATTTCAAGA 843763 Query 125699 CAAAGCTTCTGGA-ATCTGACCTTTTCGACCAAAGACTTCGAACAAAAGTCTTGGGGCTT 125757 || || || | | || || || |||||||||||| | | |||| || ||| Sbjct 843764 CAGAG-TTGTACACCTCGGAACTGTTCGACCAAAGATTGAAAGCAAAGGTGTTGAAAACA 843822 Query 125758 TTCGACATTCCGTATGGCGGCGATGCAGGACTTTCA--CAAGCCATCGACATGTCC 125811 ||||| || ||||| ||||| | | | ||||| ||||| ||||| ||||| Sbjct 843823 GTCGACGTTAGCTATGGGGGCGA-GAACG-GTTTCAACCAAGCTATCGATTTGTCC 843876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109465636293341