Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq557 104 2e-17 seq492 96.9 2e-15 seq475 91.5 1e-13 >seq557 Length=252103 Score = 104 bits (114), Expect = 2e-17 Identities = 151/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831 |||||||||| ||| || ||||||||||| ||||| | |||| | ||| | || || Sbjct 154950 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAGG-TGCGTCCGTCCTC 154892 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || || || || || || |||||||| | || | || |||||||| Sbjct 154891 AAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTC--GGGGGATGCCTTCCTTGTCCTG 154834 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 || || |||||| | |||| || || ||| || |||| || || ||||| Sbjct 154833 GATTTTGGTCTTGACGTTCTCAATCGTGTCTGAGGACTCGACCTCGAGTGTGATTGTTTT 154774 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| |||||||||||||||||||| Sbjct 154773 GCCCGTGAGGGTCTTCACAAAGATCTGCAT 154744 >seq492 Length=1085467 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831 |||| ||||| ||| || ||||||||||| ||||| | || | | ||| | || || Sbjct 148072 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACG-TGCGTCCGTCCTC 148130 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || || || || || || |||||||| | || | || |||||||| Sbjct 148131 AAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTG 148190 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 || || |||||| | |||| || || ||| || |||| || || ||||| Sbjct 148191 GATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTT 148250 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| |||||||||||||||||||| Sbjct 148251 GCCCGTGAGGGTCTTCACAAAGATCTGCAT 148280 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831 |||| ||||| ||| || ||||||||||| ||||| | || | | ||| | || || Sbjct 148300 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACG-TGCGTCCGTCCTC 148358 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || || || || || || |||||||| | || | || |||||||| Sbjct 148359 AAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTG 148418 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 || || |||||| | |||| || || ||| || |||| || || ||||| Sbjct 148419 GATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTT 148478 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| |||||||||||||||||||| Sbjct 148479 GCCCGTGAGGGTCTTCACAAAGATCTGCAT 148508 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831 |||| ||||| ||| || ||||||||||| ||||| | || | | ||| | || || Sbjct 148528 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACG-TGCGTCCGTCCTC 148586 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || || || || || || |||||||| | || | || |||||||| Sbjct 148587 AAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTG 148646 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 || || |||||| | |||| || || ||| || |||| || || ||||| Sbjct 148647 GATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTT 148706 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| |||||||||||||||||||| Sbjct 148707 GCCCGTGAGGGTCTTCACAAAGATCTGCAT 148736 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831 |||||||| | ||| |||||||| ||||| ||||| | |||| | || |||| || Sbjct 147160 ACCAAGTGCAGTGTAGACTCTTTCTGGATGTTGTAGTCGCTCAAGG-TACGACCATCCTC 147218 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || || || || || || |||||||| | || | ||||||||||| Sbjct 147219 AAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTG 147278 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| ||| || || |||||| || | |||||| || | || || ||||| Sbjct 147279 AATTTTCGTCTTCACATTCTCTATCGTATCCGATGACTCAACTTCAAGCGTAATCGTTTT 147338 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | ||||||||||| ||||||||| Sbjct 147339 TCCAGTCAATGTCTTCACAAAAATCTGCATA 147369 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||||| ||||| | |||| | || |||| || ||||| || || || || Sbjct 147406 TCTTTCTGAATGTTGTAGTCACTCAAGG-TACGACCATCCTCAAGCTGCTTGCCAGCGAA 147464 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 147465 AATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGAATCTTAGTCTTCACGTT 147524 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | |||||| || | ||||| |||||||| || | |||||||| Sbjct 147525 CTCAATGGTATCCGATGACTCAACTTCAAGCGTTATAGTTTTTCCAGTCAATGTCTTCAC 147584 Query 34970 AAAGATCTGCATA 34982 ||| ||||||||| Sbjct 147585 AAAAATCTGCATA 147597 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||||| ||||| | || | | ||| | || || ||||| || || || || Sbjct 147862 TCTTTCTGAATGTTGTAGTCACTCAAAG-TACGTCCGTCCTCAAGCTGCTTCCCAGCGAA 147920 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| || | || | ||||||||||| ||||||| || || | Sbjct 147921 AATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTCGTCTTAAC--A 147978 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || || |||||| || | || || || ||||| || | ||||||| Sbjct 147979 TTCTCGATTGTGTCCGAGGACTCAACTTCAAGCGTAATCGTCTTTCCTGTCAAAGTCTTC 148038 Query 34968 ACAAAGATCTGCAT 34981 ||||| |||||||| Sbjct 148039 ACAAAAATCTGCAT 148052 >seq475 Length=1546706 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || |||||||| ||||| | | |||| || || |||| || ||||||||||| Sbjct 934430 TCCTTTTGGATGTTATAATCCGACAAGGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAA 934489 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || ||||| || || | ||||||||||| ||||| ||||| | Sbjct 934490 ATCAGACGCTGTTGGTCCTGAGGAATGCCCTCCTTGTCTTGGATCTTTGACTTGACATTT 934549 Query 34911 GCTATCGATTCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || | || || ||| | || || || | ||| ||||| || || || |||||||| | Sbjct 934550 GC-AACG-TTGTCCGACGATTCTACCTCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGA 934607 Query 34969 CAAAGATCTGCAT 34981 | || |||||||| Sbjct 934608 CGAAAATCTGCAT 934620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629156881944