Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq864 163 3e-35 >seq864 Length=1598700 Score = 163 bits (180), Expect = 3e-35 Identities = 601/949 (63%), Gaps = 2/949 (0%) Strand=Plus/Plus Query 47864 AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGT 47923 |||||| | || ||||| || || || | || || || || ||||||| || || Sbjct 469112 AACAAATTTGTTGAGTGCAATGGAGGCCAANTTGCACACGGCAACCTCATCGGGTGAGGT 469171 Query 47924 ATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT 47983 |||| || || |||| ||| | ||| || || ||||| | || || || || Sbjct 469172 GTATTCAATAATCTCAGTACACAAATTNGAGCAACGAATGGTACCGAGGTTCTGCTGGTT 469231 Query 47984 ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043 | ||||||| | ||||| || ||||| | || ||||| || || ||||| | Sbjct 469232 GCTCTTCCTGTTACAGGAATCCTTATANAGCATGTATGGGGTTCCGGTCTCAATCTGCGC 469291 Query 48044 TTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATG 48103 || | |||| | |||||| | | || | || || || ||| | | Sbjct 469292 CTCCAAAATAGCGTACCAAACCTTNCGCGCNTCAATCTTNGCCCTTGCTCGCCCTTGTTT 469351 Query 48104 TTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACA 48163 |||||||| | || | || ||||||||| | ||||| |||| | | | || || Sbjct 469352 CTCGTATTTCATGTANAGCTCCTCAAATTCGNCACCATAAACATCAGCCAGACCGGGTGC 469411 Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATC 48223 ||||| ||||| | | ||||| ||| | | || || ||||||| | ||| Sbjct 469412 CTCATTCGGACAGAAGAGGGACCATGAANCATTTTCCTCNACCCTTTTCATAAACAAATC 469471 Query 48224 TGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCC 48282 || ||||| || | ||| || | |||||| | | | ||||| |||||| |||| Sbjct 469472 NGGAATCCAGAGNCC-ATAGAAGAGATCCCTTGCACGCTGCTCTTCCTTGCCATGATTCT 469530 Query 48283 TTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTA 48342 | | || || || || | || || |||||||| || || || || ||||| | Sbjct 469531 TCCNCAAGTCTAGNAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAAAGG 469590 Query 48343 CACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTA 48402 | || || || || || ||||| | ||| ||||| || | || || || || | Sbjct 469591 CGCCCTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCCTNA 469650 Query 48403 ACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTC 48462 ||| |||||||| ||||| || |||||||||| || |||||| | | | | | Sbjct 469651 GCATNGGGACAATTCCATTGGAAGTACCATTGGTGCCTCGAATATAGGACCGAGTGCCCC 469710 Query 48463 TTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTT 48522 | || || | | | || ||||| || || || || || | ||||| || | Sbjct 469711 TGATGTTGTGGACGGCGAGGCCGATACCGCCGGCAGACTTTGAAATGACGGCACANCGNT 469770 Query 48523 TAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAG 48582 | | || || ||||| ||||| ||| |||||| ||||| | | || ||| ||||| | Sbjct 469771 TCANNGTGTCGTAAATGCCTTCGATAGAATCATCAGTCATAGTGAGTAAAAAGCAACTNG 469830 Query 48583 ACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATT 48642 ||| || ||| |||| || || | ||| || || || || || ||||| | || | Sbjct 469831 ACAGCTGAGGACGACAGGTACCCGCATTGAACAAAGTAGGNGANGCATGTGTGAAGAGCT 469890 Query 48643 TCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTA 48702 | ||| | | || || | | || | || || || | |||| || || | Sbjct 469891 TNCGTGAGAGAGCGTCGTAGGTGTTGAGAATGGCCTCCATGTCACCGAGATGAATGCCAA 469950 Query 48703 TAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAA 48762 || || | ||| | ||||| || || | |||||||| || || | ||| ||| | Sbjct 469951 CCGAAACCCTCATNAGCATATGCTGCGGACGCTCAACAATCTTATTGTCAATTCTCAGCA 470010 Query 48763 GATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 || || ||||||| || ||||| || ||||| | ||| |||||||| Sbjct 470011 AGTAGGACCTTTCCAAAGTCTTAAANCCNAAATAATCGTACGAAAAGTC 470059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562100909397720