Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq708 152 4e-32 seq191 143 2e-29 seq263 87.8 1e-12 >seq708 Length=363590 Score = 152 bits (168), Expect = 4e-32 Identities = 415/629 (66%), Gaps = 5/629 (1%) Strand=Plus/Minus Query 29759 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGAT 29818 |||| || ||||| | || |||| ||||| | || ||| || | || | ||||| Sbjct 200972 TCAGCGTTGGAAACGCTCGAGGCTGTCTCTCAATTTGCTCCTTGAGTGCCTCAATGTGAT 200913 Query 29819 CCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29878 ||| || || | ||| |||| |||||||| ||||| |||| ||||| || | Sbjct 200912 TGTTGTACACATGTGTGTCCCCCAACACATGGACAAAGTCTCCGGGTTTGAGCCCTGTCA 200853 Query 29879 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 29938 | | || || | | || || || || || || || || || |||||||| || | Sbjct 200852 CCTTGGCGATTAGACATGTTAGCAGCGAATAAGATGCTATATTGAACGGTACCCCAAGTC 200793 Query 29939 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACT 29998 ||||||| | || | ||||| | ||||| || ||||| |||| || || |||| Sbjct 200792 CCATGTCGCAGGAGCGTTGGTACATTTGACATGATAGCTCGCCGTTTGCGACATAGAACT 200733 Query 29999 GACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGC 30058 | | ||||||||| ||||| ||||| | | | | |||||||| || Sbjct 200732 GGGCTAGAAGGTGGCACGGTGGAAGTGCCATCTTGTCAGTGGCACACGGGTTCCAAGCTG 200673 Query 30059 ACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCT 30118 | | ||| || |||||||| | |||||| || || || | | | || || Sbjct 200672 AAATGATCATTCGCCTGTCGTTTGGGTTATTAACAATTGTGTTAATCACATCAGTCAACT 200613 Query 30119 GATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT-GTCCGTGTACTCTGCTCCGAAATGC 30177 ||||| |||| ||| |||||| ||| || | || || ||||| || || || || Sbjct 200612 GATCCTTCCCCGCCCCTCTGTAGTC-GCCATCCTTGTTTGTATACTCCGCGCCAAAGTGT 200554 Query 30178 CTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC 30237 | ||| || || || ||||| || || |||||||||||||||| | || || |||| Sbjct 200553 CGCCATTGAAATCCATACACAGGACCAAGGTCTCCCTCTTCCC-GATCTGTAAACCCCGA 200495 Query 30238 TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGC 30297 |||||||||| | | || || || | ||||| || ||||||||||| | ||| Sbjct 200494 GAGTCCAAAAAGCTTTTTGATCCATTTCCTTCCCAAATTCGGACCCCCTTCTCTGTCAGC 200435 Query 30298 TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA 30357 ||||| | ||| || | | ||||| | ||||||||| | || || |||| Sbjct 200434 AGTTTGGCATCAGTGCTTCCCTTAATAAACCAAAAAAGCTCCTCCGCAAC-ACCCGCCAA 200376 Query 30358 AAGACCCTCTTGGTCGTGAGGAG-GGGAA 30385 || || | |||||||||||| || ||||| Sbjct 200375 AACACTCGCTTGGTCGTGAGAAGCGGGAA 200347 >seq191 Length=259989 Score = 143 bits (158), Expect = 2e-29 Identities = 411/628 (65%), Gaps = 3/628 (0%) Strand=Plus/Plus Query 29760 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATC 29819 ||| || ||||| | || |||| ||||| | || ||| || | || | ||||| Sbjct 120558 CAGCGTTGGAAAAGCTCGAGGCTGTCTCTCAATTTGCTCCTTGAGTGCCTCAATGTGATT 120617 Query 29820 CAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGAC 29879 ||| || || | ||| |||| |||||||| ||||| || | ||||| || || Sbjct 120618 GTTGTACACATGTGTGTCCCCCAACACATGGACAAAGTCTCCGGGGTTGAGCCCTGTCAC 120677 Query 29880 GTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCC 29939 | || || | | || || || || || || || || || |||||||| || || Sbjct 120678 CTTGGCGATTAGACATGTTAGCAGGGAATAAGATGCTATATTGAACGGTACCCCAAGTCC 120737 Query 29940 CATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG 29999 |||||| | || | ||||| | ||||| || ||||| |||| || || ||||| Sbjct 120738 CATGTCGCAGGAGCGTTGGTACATTTGACATGATAGCTCGCCGTTTGCGACATAGAACTG 120797 Query 30000 ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCA 30059 | ||||||||| ||||| ||||| | | | | |||||||| || | Sbjct 120798 GGCTAGAAGGTGGCACGGTGGAAGTGCCATCTTGTCAGTGGCACACGGGTTCCAAGCTGA 120857 Query 30060 CACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTG 30119 | ||| || |||||||| | |||||| || || ||| | | | || ||| Sbjct 120858 AATGATCATTCGCCTGTCGTTTGGGTTATTAACAATTGTGTCAATTACATCAGTCAACTG 120917 Query 30120 ATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT-GTCCGTGTACTCTGCTCCGAAATGCC 30178 |||| |||| ||| |||||| || || | || || ||||| || || || || | Sbjct 120918 ATCCTTCCCCGCCCCTCTGTAGTC-GCAATCCTTGTTTGTATACTCCGCGCCAAAGTGTC 120976 Query 30179 TCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT 30238 ||| || || || ||||| || || |||||||||||||||| | || |||| Sbjct 120977 GCCATTGAAATCCATACACGGGACCAAGGTCTCCCTCTTCCCGATCTGTAAACCCCCGAG 121036 Query 30239 TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCT 30298 |||||||||| | | || || || | ||||| || ||||||||||| | ||| Sbjct 121037 AGTCCAAAAAGCTTTTTGATCCATTTCCTTCCCAAATTCGGACCCCCTTCTCTGTCAGCA 121096 Query 30299 CTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAA 30358 ||||| | ||| || | | ||||| | ||||||||| | || || ||||| Sbjct 121097 ATTTGGCATCAGTGCTTCCCTTAATAAACCAAAAAAGCTCCTCCGCAACACCCCGCCAAA 121156 Query 30359 AGACCCTCTTGGTCGTGAGGAG-GGGAA 30385 | || | |||||||||||| || ||||| Sbjct 121157 ACACTCGCTTGGTCGTGAGAAGCGGGAA 121184 >seq263 Length=70425 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 29830 TGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 29889 || || || || || ||||||||||||||||| | | ||||| | || | |||||| Sbjct 36014 TGCGCATCGCCAAGTGTGTGGACAAACTCTCCGAGCTGCAGCCCTGCTGCGCGTGCCATC 35955 Query 29890 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCC 29949 ||| ||||| | || ||| ||| || || || ||||| ||||| | || | Sbjct 35954 ATGAGTGTGAGCAAAGCGTAAGAGGCAATATTGAACGGTACGCCGAGAAAGACATCGGCT 35895 Query 29950 GACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTG 30009 || || || |||||||| || ||||||| ||||||| |||| |||||| | | | Sbjct 35894 GATCTTTGATAGAGCTGGCAAGAGAGCTTTCCGTCGAGCACGGCAAACTGGAAGAGGCAA 35835 Query 30010 TGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGAT 30065 ||||| || || | ||||| || | ||| |||||||| || | ||||| Sbjct 35834 TGGCAAGGCGGCAATGCCATATCGCTGACATCTGCCGGGTTCCATGCCGAGACGAT 35779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408612007429679