Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq475 145 6e-30 seq99 132 4e-26 seq557 129 5e-25 seq492 105 5e-18 >seq475 Length=1546706 Score = 145 bits (160), Expect = 6e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || ||||| ||||| || || ||||| || || ||||| | Sbjct 934394 CCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTTTGGATGTTATAATCCGAC 934453 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | | || ||||||||||| || ||||| |||| ||||||||| || | ||| Sbjct 934454 AAGGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGA 934513 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || ||||| || ||| || ||| || | || |||| |||| ||| || Sbjct 934514 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACATTTGCAACGTTGTCCGACGATTCTACC 934573 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 ||||| |||| || || ||||||| ||| || || || ||||||||||| Sbjct 934574 TCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCATGGT 934623 >seq99 Length=379092 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || ||||| ||||| || || ||| | || ||||||||| | Sbjct 173858 CCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTTGG-ATGTTGTAATCGACA 173916 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | | || ||||||||||| || ||||| |||| ||||||||| || | ||| Sbjct 173917 AG-GTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGA 173975 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || ||||| || ||| || ||| || | | |||| || | ||| || Sbjct 173976 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACATTTGCAATGTTGTCCGATGATTCTACC 174035 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 ||||| |||| || || ||||||| ||| || || || ||||||||||| Sbjct 174036 TCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCATGGT 174085 >seq557 Length=252103 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || |||| ||| | |||||| ||||| || |||||||| || | |||| | || Sbjct 156093 CGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGGTTCGGCCA 156034 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | ||||| || || || ||||||||||| || ||||| ||||| || || ||| Sbjct 156033 TCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTA 155974 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || || || || || ||| |||| | ||||| |||| |||||| ||||| || | | Sbjct 155973 TCCTGGATCTTGGTCTTCACATTTTCAATCGTGTCCGACGATTCCACCTCAAGCGTAATC 155914 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || || | || || ||||| ||||||||| Sbjct 155913 GTCTTACCCGTAAGCGTCTTCACAAAAATCTGCATG 155878 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || |||| ||| | |||||| ||||| || |||||||| || | |||| | || Sbjct 156321 CGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGGTTCGGCCA 156262 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || | ||||| || || || ||||||||||| || ||||| ||||| || || ||| Sbjct 156261 TCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTA 156202 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAG-AGTGAC 101433 || || || || || ||| |||| | || || || | || |||||||| || | Sbjct 156201 TCCTGGATCTTGGTCTTCACATTTTC-ATCGTATCCGATGACTCAACTTCAAGCGGTAAT 156143 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || || || || || || |||||||| Sbjct 156142 AGTCTTTCCAGTCAACGTCTTAACGAAAATCTGCAT 156107 Score = 98.7 bits (108), Expect = 8e-16 Identities = 145/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| ||||| || || || || ||||||||| | ||| | |||| || | || Sbjct 156536 ATGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAAAGTACGACCATCCTCAAGCTG 156477 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || |||| |||||| || ||||||||||| || || || || || || || Sbjct 156476 CTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTT 156417 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| |||| | ||||| || | || |||||||| || | || || || || Sbjct 156416 GGTCTTCACATTTTCAATCGTGTCCGATGACTCAACTTCAAGCGTAATAGTCTT-CCAGT 156358 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 156357 CAACGTCTTAACGAAAATCTGCAT 156334 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || ||||| || || ||||| || | ||| | | || || | ||| Sbjct 155625 TGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCAAGCTGC 155566 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| |||||| |||||||| ||||| || || || || || || || Sbjct 155565 TTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTA 155506 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || || || | || ||||||||||| | || || || || Sbjct 155505 GTCTTCACATTCTCAATCGTATCCGATGACTCAACTTCAAGAGTAATAGTCTTTCCAGTC 155446 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 155445 AATGTCTTCACGAAAATCTGCAT 155423 >seq492 Length=1085467 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| ||||| || || || || ||||||||| | || | |||| || | ||| Sbjct 146938 TGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAAGGTACGACCATCCTCAAGCTGC 146997 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || |||| |||||| || ||||||||||| || || || || || || || Sbjct 146998 TTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTTG 147057 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | ||||| |||| ||||| ||||| || | ||| || || || Sbjct 147058 GTCTTCACATTTTCAATGGTGTCCGACGACTCCACCTCAAGCGTAATCGTCTTACCCGTA 147117 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 147118 AGCGTCTTCACAAAAATCTGCAT 147140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396272976310911