Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq557 118 8e-22 seq492 118 8e-22 seq475 116 3e-21 seq99 100 2e-16 >seq557 Length=252103 Score = 118 bits (130), Expect = 8e-22 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| || || ||| ||| || ||||| ||||| ||| | | | ||| |||| || Sbjct 155176 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCA 155117 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| ||||| ||||||| || | ||| |||||||| | Sbjct 155116 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGGG--ATGCCTTCCTTGTCCTGA 155059 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | || || || | ||||||||| | ||||| || ||| Sbjct 155058 ATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGACTCCACCTCAAGGGTAATAGTCTTT 154999 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||||||||| || ||||||||||| Sbjct 154998 CCGGTCAAAGTTTTCACGAAAATCTGCAT 154970 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| || || ||| |||||| ||||| ||||| ||| | | | ||| |||| || Sbjct 155859 ACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCA 155800 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| ||||| ||||| | |||| ||||||||||| Sbjct 155799 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGG 155740 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||| || || | |||||| || ||| Sbjct 155739 ATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACTTCAAGCGTAATAGTCTTT 155680 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || |||||||||||||| Sbjct 155679 CCAGTCAACGTCTTCACAAAAATCTGCAT 155651 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| || || ||| |||||| ||||| ||||| ||| | | | ||| |||| || Sbjct 155631 ACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCA 155572 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| ||||| ||||| | |||| ||||||||||| Sbjct 155571 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGG 155512 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||| || || | ||||| || ||| Sbjct 155511 ATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACTTCAAGAGTAATAGTCTTT 155452 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || ||||||||||| Sbjct 155451 CCAGTCAATGTCTTCACGAAAATCTGCAT 155423 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCG-ATCGTCGTC 48616 |||| || || ||| ||| || ||||| ||||| || | | || | |||| || Sbjct 155403 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGCTCAAGGTACGGACCGTCCTC 155344 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | |||||| || || || || || ||||| ||||||| ||| ||||||||||| Sbjct 155343 AAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGATCCGGAGGATA-CCCTCCTTGTCCTG 155285 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 |||||| || ||| | | || || || | ||| ||||| | |||||||| || Sbjct 155284 AATCTTCGTCTTAACATTCTCGATAGTGTC-GAGGACTCAACCTCAAGGGTAATCGTCTT 155226 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| |||||||| || || ||||||||||| Sbjct 155225 TCCGGTCAAAGTCTTCACGAAAATCTGCAT 155196 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| || | ||| | || |||||| || |||||||| ||| | |||| Sbjct 156096 AGGCGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGGTTCGG 156037 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || || |||| ||||| || || | |||| |||||| Sbjct 156036 CCATCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCC 155977 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | || |||| |||||||| | |||| Sbjct 155976 TTATCCTGGATCTTGGTCTTCACATTTTCAATCGTGTCCGACGATTCCACCTCAAGCGTA 155917 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| | || || |||||||||||||| Sbjct 155916 ATCGTCTTACCCGTAAGCGTCTTCACAAAAATCTGCAT 155879 >seq492 Length=1085467 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||| ||| | || |||||| ||||| ||||| ||| | | | || Sbjct 147835 AGACGCAACACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGT 147894 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| || || || ||||| ||||| ||||| | |||| |||||| Sbjct 147895 CCGTCCTCAAGCTGCTTCCCAGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCC 147954 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | ||| || || | |||| Sbjct 147955 TTGTCCTGAATCTTCGTCTTAACATTCTCGATTGTGTCCGAGGACTCAACTTCAAGCGTA 148014 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| |||||||| || |||||||||||||| Sbjct 148015 ATCGTCTTTCCTGTCAAAGTCTTCACAAAAATCTGCAT 148052 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||||| || || | |||||| || || || |||||| || || ||||| || Sbjct 147142 CCGCCCCGGAGGCGAAGCACCAAGTGCAGTGTAGACTCTTTCTGGATGTTGTAGTCGCTC 147201 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || || | |||||| || || || ||||| ||||| || || | ||| Sbjct 147202 AAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGA 147261 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| ||| ||| || || ||| | | | || || | ||| || Sbjct 147262 ATTCCCTCCTTGTCCTGAAT-TTTCGTCTTCACATTCTCTATCGTATCCGATGACTCAAC 147320 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||||||||||||| ||||| || || |||||||||||||| Sbjct 147321 TTCAAGCGTAATCGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147368 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||||| || |||| ||||| ||| | || |||||| ||||| ||||| ||| Sbjct 147370 CCGCCCCGGAGGCGCAGCACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTC 147429 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || || | |||||| || || || ||||| ||||| || || | ||| Sbjct 147430 AAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGA 147489 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| |||||| || || | | | || || | ||| || Sbjct 147490 ATTCCCTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACT 147549 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||| || |||||||| ||||| || || |||||||||||||| Sbjct 147550 TCAAGCGTTATAGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147596 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || |||| ||||| ||| | || |||||| || || ||||| ||| Sbjct 147598 CCACCCCGAAGGCGCAGCACCAGATGCAATGTAGACTCTTTCTGGATGTTGTAGTCACTC 147657 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || |||| || | |||||| || || || || || ||||| || || | ||| Sbjct 147658 AAGGTACGTCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGA 147717 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || || | | | || || | ||| || Sbjct 147718 ATTCCCTCCTTGTCCTGGATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACT 147777 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||||||||||||| ||||| || || |||||||||||||| Sbjct 147778 TCAAGCGTAATCGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147824 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || |||||||| | | ||| | || || | |||||| || || || Sbjct 146949 CTCCTTCTGGATGTTGTAATCGCTCAAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAA 147008 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||| || || | |||| ||||||||||| ||||| || ||| Sbjct 147009 AATCAGACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTTGGTCTTCACATT 147068 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || |||| ||||||||| | ||||||||| || ||||| | || || || Sbjct 147069 TTCAATGGTGTCCGACGACTCCACCTCAAGCGTAATCGTCTTACCCGTAAGCGTCTTCAC 147128 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 147129 AAAAATCTGCAT 147140 >seq475 Length=1546706 Score = 116 bits (128), Expect = 3e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || ||| ||||| || || ||||| || | |||| Sbjct 934403 AGACGGAGCACCAAATGGAGGGTTGACTCCTTTTGGATGTTATAATCCGACAAGGTTCGG 934462 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 ||||| ||||| ||||| |||||||| ||||| |||||||| ||| |||| ||||||| Sbjct 934463 TCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGAATGCCCTCC 934522 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | || || |||| || ||||| | || Sbjct 934523 TTGTCTTGGATCTTTGACTTGACATTTGCAACGTTGTCCGACGATTCTACCTCAAGGGTG 934582 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || || || | ||| || || ||||||||||| ||| Sbjct 934583 ATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCATGGTG 934624 >seq99 Length=379092 Score = 100 bits (110), Expect = 2e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || ||| ||| || | |||||||| || | |||| Sbjct 173867 AGACGGAGCACCAAATGGAGGGTTGACTCCTTTGGA-TGTTGTAATC-GACAAGGTTCGG 173924 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 ||||| ||||| ||||| |||||||| ||||| |||||||| ||| |||| ||||||| Sbjct 173925 TCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGAATGCCCTCC 173984 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | || || | || ||||| | || Sbjct 173985 TTGTCTTGGATCTTTGACTTGACATTTGCAATGTTGTCCGATGATTCTACCTCAAGGGTG 174044 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || || || | ||| || || ||||||||||| ||| Sbjct 174045 ATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCATGGTG 174086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380932386273729