Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq272 96.9 6e-15 seq320 95.1 2e-14 >seq272 Length=50886 Score = 96.9 bits (106), Expect = 6e-15 Identities = 206/304 (68%), Gaps = 4/304 (1%) Strand=Plus/Minus Query 111010 TGGGCAATGCGGTCGCCGCGATTGATGACGAACGGATTGCGGCCGTGGTTGATCAGGATC 111069 || || || || || ||||| |||| ||||||| | ||| | |||||||||||| Sbjct 25888 TGAGCTATACGCTCTCCGCGCGTGATCTGGAACGGAGCGTCACCGAGATTGATCAGGATC 25829 Query 111070 ACCTTGATCTCGCCGCGATAGTCGCTGTCGACGGTACCGGGCGAATTCAGGACAGTGATA 111129 ||||||| ||| |||||||| || ||||||| ||| || || | ||||| ||||| | | Sbjct 25828 ACCTTGACCTCACCGCGATAATCACTGTCGATGGTCCCCGGTGTATTCA-GACAG-GTCA 25771 Query 111130 GACGA--CTTGGCGGCGAGGCCCGAGCGCGGCCGGACTTGCAGTTCCAGGCCCGCCGGCA 111187 ||| | ||| || || | || || || ||||||| |||| || || |||| | Sbjct 25770 GACCATGCTTTGCAGCCAATCCGGAACGTGGCCGGATCTGCACCTCATAACCTTCCGGAA 25711 Query 111188 GGGCGACCGTGACGCCGGTCGGGATGATGCCGACTTCGCCCGCAGCGATAGTAAAGGGTT 111247 || | | | || || || | ||| | | | || | ||| | || | ||| | Sbjct 25710 TCGCAAAGCTTAGTCCTGTTGGAACCATGGCCCTTGCACCTGGAGCCAGCGTGATGGGGT 25651 Query 111248 CATCCTCGGGGATCGCGGCACGCAAGTCCAGGCCGGCGGACCCACGGGTCTCGTAGGCTG 111307 ||||||||| | || ||||| | |||| ||| || || ||| ||||| || || | Sbjct 25650 CATCCTCGGCCACGGCAGCACGTAGATCCATGCCAGCCGATCCAATCGTCTCATATGCCG 25591 Query 111308 GCAG 111311 |||| Sbjct 25590 GCAG 25587 >seq320 Length=46213 Score = 95.1 bits (104), Expect = 2e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 132957 TTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGT 133016 |||| |||||||||||||| |||||||||||| ||||||||||| ||||||| ||| Sbjct 21015 TTTGTCGCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGCAGGT 20956 Query 133017 TCAAATCCCTCCCCCGCATCCA 133038 |||||||| |||||||| ||| Sbjct 20955 TCAAATCCTGCCCCCGCAACCA 20934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895753825679160