Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq932 109 1e-18 seq864 96.9 6e-15 >seq932 Length=795108 Score = 109 bits (120), Expect = 1e-18 Identities = 295/449 (66%), Gaps = 18/449 (4%) Strand=Plus/Minus Query 213221 GTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGG 213280 ||| ||||| || || ||||| ||| |||| |||| | |||||| | | ||| || Sbjct 206898 GTAATAGATCGTCTCGAATATGTCCTTGTTTAGCTCCCGCGCCTCTTCGCTCTCGAATGG 206839 Query 213281 CATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTG 213340 ||| ||| ||| ||| |||||||| ||||| ||||| || || || | ||| Sbjct 206838 CATACGCATCAAAATGAAGGTATCCGCCAGCCCTTGGACTCCGATACCTATCGGACGGTG 206779 Query 213341 TCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTT 213400 |||| ||| ||| | | |||||| | |||||||||||| ||| || |||||||| Sbjct 206778 CCTCAAGTTGGACCTCTTGGCCTCCTCAACCGGGTAAAAGTTGATGTCAATTATCTTGTT 206719 Query 213401 GAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACA------C 213454 | ||| ||| ||| | | | | ||| ||||| | | | | Sbjct 206718 CAAATTGTTGGTTACCATTCTCACAATCTCCCCCAATGCGTCGTGGTCGTAGGTAGGGGC 206659 Query 213455 GTAGCCCCCGTC-----CT-GCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAAC 213508 | |||| |||| || | ||||| | || || ||| ||||| ||||| || Sbjct 206658 GGAGCCATCGTCAGAAACTCGAACAAATTTGTTGAGTGCAATGGAGGCCAAATTGCACAC 206599 Query 213509 GGCCACCTCCT---GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCG 213565 ||| ||||| | | ||| ||||| || || ||||| || |||| || ||| || Sbjct 206598 GGCAACCTCATCGGGTGAG---GTGTATTCAATAATCTCAGTACACAAATTTGAGCAACG 206542 Query 213566 GATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTA 213625 ||||| || |||||||| ||||| ||| ||| |||||||| ||||||||||| Sbjct 206541 AATGGTACCGAGGTTCTGCTGGTTGCTCTTCCTGTTACAGGAATCCTTATAGAGCATGTA 206482 Query 213626 GGGGGACCCGGTCTCTAGCTGGGACACCA 213654 |||| |||||||| | ||| | | ||| Sbjct 206481 TGGGGTTCCGGTCTCAATCTGCGCCTCCA 206453 >seq864 Length=1598700 Score = 96.9 bits (106), Expect = 6e-15 Identities = 291/449 (65%), Gaps = 18/449 (4%) Strand=Plus/Plus Query 213221 GTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGG 213280 ||| ||||| || || ||||| ||| |||| |||| | |||||| | | ||| || Sbjct 468851 GTAATAGATCGTCTCGAATATGTCCTTGTTTAGCTCCCGCGCCTCTTCGCTCTCGAATGG 468910 Query 213281 CATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTG 213340 ||| ||| ||| ||| |||||||| ||||| ||||| || || || | ||| Sbjct 468911 CATACGCATCAAAATGAAGGTATCCGCCAGCCCTTGGACTCCGATACCTATCGGACGGTG 468970 Query 213341 TCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTT 213400 |||| ||| ||| | | |||||| | |||||||||||| ||| || |||||||| Sbjct 468971 CCTCAAGTTGGACCTCTTGGCCTCCTCAACCGGGTAAAAGTTGATGTCAATTATCTTGTT 469030 Query 213401 GAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACA------C 213454 | ||| ||| ||| | | | | ||| ||||| | | | | Sbjct 469031 CAAATTGTTGGTTACCATTCTCACAATCTCCCCCAATGCGTCGTGGTCGTAGGTAGGGGC 469090 Query 213455 GTAGCCCCCGTC-----CT-GCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAAC 213508 | | || || | | | ||||| | || || ||| ||||| ||||| || Sbjct 469091 GGANCCATCGNCAGAAANTCGAACAAATTTGTTGAGTGCAATGGAGGCCAANTTGCACAC 469150 Query 213509 GGCCACCTCCT---GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCG 213565 ||| ||||| | | ||| ||||| || || ||||| || |||| || ||| || Sbjct 469151 GGCAACCTCATCGGGTGAG---GTGTATTCAATAATCTCAGTACACAAATTNGAGCAACG 469207 Query 213566 GATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTA 213625 ||||| || |||||||| ||||| ||| ||| |||||||| || |||||||| Sbjct 469208 AATGGTACCGAGGTTCTGCTGGTTGCTCTTCCTGTTACAGGAATCCTTATANAGCATGTA 469267 Query 213626 GGGGGACCCGGTCTCTAGCTGGGACACCA 213654 |||| |||||||| | ||| | | ||| Sbjct 469268 TGGGGTTCCGGTCTCAATCTGCGCCTCCA 469296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931519723608320