Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq28 100 5e-16 seq489 93.3 8e-14 >seq28 Length=612614 Score = 100 bits (110), Expect = 5e-16 Identities = 287/436 (66%), Gaps = 13/436 (3%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATG-GACGG-CTGGTACGCTCTATCC 25569 |||||| ||||| || || ||||| | |||| || || || |||| | | || || Sbjct 279719 CTGGACGGCCGAGGAAATCGATCTTTC--AGGAGATCTGAAGGACTGGGAATCGCTGTCG 279662 Query 25570 AAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATA 25629 | | ||| |||||| |||| |||||||| |||||||| || || ||||| || Sbjct 279661 GATGGGGAGAGGCATTTCATCAAAACGGTGTTGGCCTTCTTTGCGGCGTCGGATGGAATT 279602 Query 25630 GTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT 25689 || || || || |||||||| | || || |||| |||||||| ||| Sbjct 279601 GTACTGGAAAACTTGGTAGAGAGATTTTGTAACGACGTACAGTTGCCGGAGGCCAGATGT 279542 Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749 ||||| | |||||| ||| || || ||||||||||| || |||| | ||| ||| Sbjct 279541 TTCTATGCGTTCCAGGCGGCGATGGAGAATGTGCACTCGGAAACGTATTC---GCTGCTG 279485 Query 25750 ATG---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC 25806 || ||||| || | ||| | |||| |||||||| || | || |||||| | Sbjct 279484 TTGGATACGTATATCAAGGACAATACTGAGAAGGATCGGCTTTTCAGAGCGATCGAGGAG 279425 Query 25807 ATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCT 25866 || || || | | | || ||| ||||| || ||||| ||||| | Sbjct 279424 ATTCCTTGCGTGACTCGCAAAGCGGAATGGGCGATTCGATGGATTGGATCGCAGAG---T 279368 Query 25867 ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCG 25926 | |||| ||||| |||| || ||||| ||||||||||| || || ||| || ||| Sbjct 279367 AGCTTTGCGGAGCGATTGGTGGCGTTTGCAGCTGTGGAGGGGATTTTCTTCTCAGGGTCG 279308 Query 25927 TTTGCGGCCATCTTCT 25942 ||| || || |||| Sbjct 279307 TTTTGTGCGATTTTCT 279292 >seq489 Length=1032923 Score = 93.3 bits (102), Expect = 8e-14 Identities = 282/433 (65%), Gaps = 11/433 (3%) Strand=Plus/Plus Query 25513 TGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAA 25572 ||||| ||||| || || ||||| | || || | | |||| | | || || | Sbjct 354583 TGGACGGCCGAGGAAATCGATCTTTCGGGAGATCTGAAGGACTGGGAATCGCTGTCGGAT 354642 Query 25573 GACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTG 25632 | ||| |||||| |||| |||||||| |||||||| || || ||||| || || Sbjct 354643 GGGGAGAGGCATTTCATCAAAACGGTGTTGGCCTTCTTTGCGGCGTCGGATGGAATTGTA 354702 Query 25633 AACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTC 25692 || || || |||||||| | || || |||| |||||||| ||||| Sbjct 354703 CTGGAAAACTTGGTAGAGAGATTTTGTAACGACGTACAGTTGCCGGAGGCCAGATGTTTT 354762 Query 25693 TACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG 25752 | || |||||| ||| || || ||||||||||| || |||| | ||| ||| || Sbjct 354763 TGCG--TTCCAGGCGGCGATGGAGAATGTGCACTCGGAAACGTATTC---GCTGCTGTTG 354817 Query 25753 ---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809 ||||| || | ||| | |||| |||||||| || | || |||||| | || Sbjct 354818 GATACGTATATCAAGGACAATACTGAGAAGGATCGGCTTTTCAGAGCGATCGAGGAGATT 354877 Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACG 25869 ||| || | | | || ||| ||||| || ||||| ||||| || Sbjct 354878 CCCTGCGTGACTCGCAAAGCGGAATGGGCGATTCGATGGATTGGATCGCAGAG---TAGC 354934 Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||| ||||| |||| || ||||| ||||||||||| || || ||| || |||||| Sbjct 354935 TTTGCGGAGCGATTGGTGGCGTTTGCAGCTGTGGAGGGGATTTTCTTCTCAGGGTCGTTT 354994 Query 25930 GCGGCCATCTTCT 25942 || || |||| Sbjct 354995 TGTGCGATTTTCT 355007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928831761341120