Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq932 105 3e-18 seq864 102 4e-17 >seq932 Length=795108 Score = 105 bits (116), Expect = 3e-18 Identities = 195/285 (68%), Gaps = 1/285 (0%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||| |||||||| | ||| |||||||| ||| || | | |||||| |||||||| Sbjct 206334 ATTCGGACAGAAGAGGGACCATGAAGCATTTTCCTCGACCCTTTTCATAAACAAATCTGG 206275 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 |||||| | | |||| || | ||| || || | | || || || || |||||||| Sbjct 206274 AATCCAGAGTCCATAGAAGAGATCCCTTGCACGCTGCTC-TCCTTGCCATGATTCTTCCG 206216 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | |||| |||||| | ||| |||| ||||| || || || ||||| ||||| || Sbjct 206215 CAAGTCTAGGAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAAAGGCGCC 206156 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 || | || || || || ||||| || || || || || |||||| | || | | ||| Sbjct 206155 CTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCCTGAGCAT 206096 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 || || | |||| | ||| || || |||| |||| | ||| Sbjct 206095 AGGGACAATTCCATTGGAAGTACCATTGGTGCCTCGAATATAGGA 206051 >seq864 Length=1598700 Score = 102 bits (112), Expect = 4e-17 Identities = 192/285 (67%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||| |||||||| | ||| | |||||| ||| || | | |||||| ||||| || Sbjct 469415 ATTCGGACAGAAGAGGGACCATGAANCATTTTCCTCNACCCTTTTCATAAACAAATCNGG 469474 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 |||||| | |||| || | ||| || || | | ||||| || || |||||||| Sbjct 469475 AATCCAGAGNCCATAGAAGAGATCCCTTGCACGCTGCTCTTCCTTGCCATGATTCTTCCN 469534 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | |||| ||||| | ||| |||| ||||| || || || ||||| ||||| || Sbjct 469535 CAAGTCTAGNAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAAAGGCGCC 469594 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 || | || || || || ||||| || || || || || |||||| | || | | ||| Sbjct 469595 CTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCCTNAGCAT 469654 Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 || || | |||| | ||| || || |||| |||| | ||| Sbjct 469655 NGGGACAATTCCATTGGAAGTACCATTGGTGCCTCGAATATAGGA 469699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253036536752225